Hb_136886_010

Information

Type -
Description -
Location Contig136886: 33-1119
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID O64973
description Disease resistance protein RPS5 OS=Arabidopsis thaliana GN=RPS5 PE=1 SV=2
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136886_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_000960_010 0.1047730885 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
3 Hb_127819_010 0.126269552 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000465_330 0.146122745 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
5 Hb_000015_180 0.1478906313 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
6 Hb_002835_260 0.1499935536 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
7 Hb_002217_270 0.1517369955 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
8 Hb_003053_060 0.1621268845 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
9 Hb_016404_010 0.1634780124 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
10 Hb_090459_010 0.1653879353 - - hypothetical protein POPTR_0005s042901g, partial [Populus trichocarpa]
11 Hb_000220_090 0.1766280195 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
12 Hb_004787_100 0.1771041496 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
13 Hb_011120_020 0.1781019398 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
14 Hb_102100_010 0.1782438181 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_143863_010 0.179463105 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
16 Hb_000506_140 0.1814073013 - - hypothetical protein PRUPE_ppb019425mg [Prunus persica]
17 Hb_005568_060 0.1832126498 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
18 Hb_000434_050 0.1868296356 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
19 Hb_138575_010 0.1902314985 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_002311_490 0.1909305519 - - PREDICTED: RING-H2 finger protein ATL2 [Jatropha curcas]

Gene co-expression network

sample Hb_136886_010 Hb_136886_010 Hb_000960_010 Hb_000960_010 Hb_136886_010--Hb_000960_010 Hb_127819_010 Hb_127819_010 Hb_136886_010--Hb_127819_010 Hb_000465_330 Hb_000465_330 Hb_136886_010--Hb_000465_330 Hb_000015_180 Hb_000015_180 Hb_136886_010--Hb_000015_180 Hb_002835_260 Hb_002835_260 Hb_136886_010--Hb_002835_260 Hb_002217_270 Hb_002217_270 Hb_136886_010--Hb_002217_270 Hb_000960_010--Hb_127819_010 Hb_090459_010 Hb_090459_010 Hb_000960_010--Hb_090459_010 Hb_143863_010 Hb_143863_010 Hb_000960_010--Hb_143863_010 Hb_102100_010 Hb_102100_010 Hb_000960_010--Hb_102100_010 Hb_000960_010--Hb_000015_180 Hb_127819_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_127819_010--Hb_001565_120 Hb_155642_010 Hb_155642_010 Hb_127819_010--Hb_155642_010 Hb_125981_010 Hb_125981_010 Hb_127819_010--Hb_125981_010 Hb_002311_490 Hb_002311_490 Hb_000465_330--Hb_002311_490 Hb_000506_140 Hb_000506_140 Hb_000465_330--Hb_000506_140 Hb_158123_010 Hb_158123_010 Hb_000465_330--Hb_158123_010 Hb_016404_010 Hb_016404_010 Hb_000465_330--Hb_016404_010 Hb_000796_200 Hb_000796_200 Hb_000465_330--Hb_000796_200 Hb_121913_010 Hb_121913_010 Hb_000465_330--Hb_121913_010 Hb_000220_090 Hb_000220_090 Hb_000015_180--Hb_000220_090 Hb_000015_180--Hb_002835_260 Hb_000434_050 Hb_000434_050 Hb_000015_180--Hb_000434_050 Hb_000015_180--Hb_102100_010 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020 Hb_011416_020 Hb_011416_020 Hb_002835_260--Hb_011416_020 Hb_002835_260--Hb_011120_020 Hb_002835_260--Hb_000220_090 Hb_002835_260--Hb_000434_050 Hb_004787_100 Hb_004787_100 Hb_002217_270--Hb_004787_100 Hb_005568_060 Hb_005568_060 Hb_002217_270--Hb_005568_060 Hb_004324_290 Hb_004324_290 Hb_002217_270--Hb_004324_290 Hb_002217_270--Hb_000434_050 Hb_002217_270--Hb_000015_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.10645 73.7965 7.32231 9.31434 2.48737 4.21705
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9449 1.81073 0.154556 0.915467 0.515201

CAGE analysis