Hb_136973_020

Information

Type -
Description -
Location Contig136973: 42332-45095
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_136973_020 0.0 - - -
2 Hb_000248_080 0.0305250324 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
3 Hb_005928_010 0.0337256941 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
4 Hb_000277_030 0.0493257111 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_001002_020 0.0574791517 - - ATP binding protein, putative [Ricinus communis]
6 Hb_054165_010 0.0739606944 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
7 Hb_137862_020 0.0741060449 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
8 Hb_009083_020 0.0750294068 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
9 Hb_160950_010 0.0863236309 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
10 Hb_002163_070 0.0881805432 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
11 Hb_003847_090 0.0903076359 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
12 Hb_172983_010 0.0953659492 - - conserved hypothetical protein [Ricinus communis]
13 Hb_064885_010 0.0983099628 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_000628_050 0.0986464857 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_023712_020 0.0998162817 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
16 Hb_010252_010 0.1007142101 - - -
17 Hb_006083_010 0.1030516618 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
18 Hb_002849_010 0.1048970914 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
19 Hb_173029_010 0.1113277345 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_004314_020 0.1161273082 - - Auxin-responsive GH3 family protein [Theobroma cacao]

Gene co-expression network

sample Hb_136973_020 Hb_136973_020 Hb_000248_080 Hb_000248_080 Hb_136973_020--Hb_000248_080 Hb_005928_010 Hb_005928_010 Hb_136973_020--Hb_005928_010 Hb_000277_030 Hb_000277_030 Hb_136973_020--Hb_000277_030 Hb_001002_020 Hb_001002_020 Hb_136973_020--Hb_001002_020 Hb_054165_010 Hb_054165_010 Hb_136973_020--Hb_054165_010 Hb_137862_020 Hb_137862_020 Hb_136973_020--Hb_137862_020 Hb_000248_080--Hb_137862_020 Hb_009083_020 Hb_009083_020 Hb_000248_080--Hb_009083_020 Hb_002163_070 Hb_002163_070 Hb_000248_080--Hb_002163_070 Hb_000248_080--Hb_005928_010 Hb_160950_010 Hb_160950_010 Hb_000248_080--Hb_160950_010 Hb_005928_010--Hb_001002_020 Hb_005928_010--Hb_000277_030 Hb_005928_010--Hb_054165_010 Hb_003847_090 Hb_003847_090 Hb_005928_010--Hb_003847_090 Hb_000277_030--Hb_001002_020 Hb_000277_030--Hb_054165_010 Hb_000277_030--Hb_003847_090 Hb_006083_010 Hb_006083_010 Hb_000277_030--Hb_006083_010 Hb_001002_020--Hb_054165_010 Hb_001002_020--Hb_003847_090 Hb_001002_020--Hb_006083_010 Hb_046610_010 Hb_046610_010 Hb_054165_010--Hb_046610_010 Hb_054165_010--Hb_006083_010 Hb_137862_020--Hb_002163_070 Hb_023712_020 Hb_023712_020 Hb_137862_020--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_137862_020--Hb_057721_010 Hb_137862_020--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_137862_020--Hb_010252_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.30811 12.4391 11.1792 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis