Hb_137068_010

Information

Type -
Description -
Location Contig137068: 4553-4880
Sequence    

Annotation

kegg
ID cit:102622994
description alpha-L-fucosidase 2-like
nr
ID KDO47956.1
description hypothetical protein CISIN_1g003571mg [Citrus sinensis]
swissprot
ID Q8L7W8
description Alpha-L-fucosidase 2 OS=Arabidopsis thaliana GN=FUC95A PE=1 SV=1
trembl
ID A0A067EAJ7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g003571mg PE=4 SV=1
Gene Ontology
ID GO:0004560
description alpha-l-fucosidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137068_010 0.0 - - hypothetical protein CISIN_1g003571mg [Citrus sinensis]
2 Hb_079268_010 0.1846565983 - - -
3 Hb_013839_010 0.1860007898 - - Angio-associated migratory cell protein, putative [Ricinus communis]
4 Hb_005568_080 0.2201180602 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000096_130 0.2230483363 - - hypothetical protein 23 [Hevea brasiliensis]
6 Hb_021888_050 0.2250341747 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
7 Hb_000139_420 0.2332805929 - - Stem-specific protein TSJT1, putative [Ricinus communis]
8 Hb_000948_080 0.2359444375 - - PREDICTED: uncharacterized protein LOC105634692 [Jatropha curcas]
9 Hb_000692_010 0.2361249353 - - PREDICTED: uncharacterized protein LOC105635295 [Jatropha curcas]
10 Hb_126861_010 0.238585983 - - hypothetical protein M569_05914, partial [Genlisea aurea]
11 Hb_000703_250 0.2413391289 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Jatropha curcas]
12 Hb_001832_120 0.2415938632 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
13 Hb_001277_320 0.2436409932 - - Stem-specific protein TSJT1, putative [Ricinus communis]
14 Hb_000317_400 0.2508346357 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
15 Hb_007432_020 0.250913714 - - hypothetical protein POPTR_0010s13310g [Populus trichocarpa]
16 Hb_000191_030 0.2530596588 - - hypothetical protein POPTR_0012s07830g [Populus trichocarpa]
17 Hb_029243_040 0.2531526919 - - PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Populus euphratica]
18 Hb_021888_120 0.2551064506 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
19 Hb_004128_110 0.2574812427 - - glutathione S-transferase L3-like [Jatropha curcas]
20 Hb_004800_060 0.2582011073 - - PREDICTED: uncharacterized protein LOC105643856 [Jatropha curcas]

Gene co-expression network

sample Hb_137068_010 Hb_137068_010 Hb_079268_010 Hb_079268_010 Hb_137068_010--Hb_079268_010 Hb_013839_010 Hb_013839_010 Hb_137068_010--Hb_013839_010 Hb_005568_080 Hb_005568_080 Hb_137068_010--Hb_005568_080 Hb_000096_130 Hb_000096_130 Hb_137068_010--Hb_000096_130 Hb_021888_050 Hb_021888_050 Hb_137068_010--Hb_021888_050 Hb_000139_420 Hb_000139_420 Hb_137068_010--Hb_000139_420 Hb_132998_020 Hb_132998_020 Hb_079268_010--Hb_132998_020 Hb_079268_010--Hb_013839_010 Hb_079268_010--Hb_005568_080 Hb_003446_050 Hb_003446_050 Hb_079268_010--Hb_003446_050 Hb_000317_400 Hb_000317_400 Hb_079268_010--Hb_000317_400 Hb_000451_060 Hb_000451_060 Hb_013839_010--Hb_000451_060 Hb_153544_010 Hb_153544_010 Hb_013839_010--Hb_153544_010 Hb_000191_030 Hb_000191_030 Hb_013839_010--Hb_000191_030 Hb_008699_020 Hb_008699_020 Hb_013839_010--Hb_008699_020 Hb_116608_010 Hb_116608_010 Hb_013839_010--Hb_116608_010 Hb_001277_320 Hb_001277_320 Hb_013839_010--Hb_001277_320 Hb_005568_080--Hb_021888_050 Hb_000326_060 Hb_000326_060 Hb_005568_080--Hb_000326_060 Hb_033772_050 Hb_033772_050 Hb_005568_080--Hb_033772_050 Hb_009486_190 Hb_009486_190 Hb_005568_080--Hb_009486_190 Hb_009510_040 Hb_009510_040 Hb_005568_080--Hb_009510_040 Hb_003052_220 Hb_003052_220 Hb_005568_080--Hb_003052_220 Hb_000836_140 Hb_000836_140 Hb_000096_130--Hb_000836_140 Hb_000096_130--Hb_013839_010 Hb_002603_060 Hb_002603_060 Hb_000096_130--Hb_002603_060 Hb_002828_040 Hb_002828_040 Hb_000096_130--Hb_002828_040 Hb_002636_080 Hb_002636_080 Hb_000096_130--Hb_002636_080 Hb_000096_130--Hb_021888_050 Hb_115241_010 Hb_115241_010 Hb_021888_050--Hb_115241_010 Hb_000975_360 Hb_000975_360 Hb_021888_050--Hb_000975_360 Hb_000948_080 Hb_000948_080 Hb_021888_050--Hb_000948_080 Hb_000649_240 Hb_000649_240 Hb_021888_050--Hb_000649_240 Hb_001902_190 Hb_001902_190 Hb_021888_050--Hb_001902_190 Hb_000331_640 Hb_000331_640 Hb_000139_420--Hb_000331_640 Hb_000086_230 Hb_000086_230 Hb_000139_420--Hb_000086_230 Hb_000258_350 Hb_000258_350 Hb_000139_420--Hb_000258_350 Hb_009265_090 Hb_009265_090 Hb_000139_420--Hb_009265_090 Hb_011671_440 Hb_011671_440 Hb_000139_420--Hb_011671_440 Hb_114893_030 Hb_114893_030 Hb_000139_420--Hb_114893_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.63001 5.13904 2.73734 3.83105 5.19579 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1781 17.1241 4.25712 12.8905 0

CAGE analysis