Hb_137288_010

Information

Type -
Description -
Location Contig137288: 224-1202
Sequence    

Annotation

kegg
ID vvi:100257572
description cinnamoyl-CoA reductase 1-like
nr
ID KJB18477.1
description hypothetical protein B456_003G055000 [Gossypium raimondii]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID A0A0D2MJM6
description Gossypium raimondii chromosome 3, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_003G055000 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137288_010 0.0 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
2 Hb_003266_110 0.0009293419 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000003_800 0.0009520135 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001322_060 0.000969577 - - unnamed protein product [Vitis vinifera]
5 Hb_001948_060 0.0037520729 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
6 Hb_020479_010 0.0049928779 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
7 Hb_000413_090 0.0073500533 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
8 Hb_187418_010 0.0074419605 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
9 Hb_001571_070 0.0105308347 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
10 Hb_002391_260 0.0113671127 - - hypothetical protein RCOM_0017280 [Ricinus communis]
11 Hb_001504_200 0.0120997258 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
12 Hb_001817_200 0.013246525 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
13 Hb_004712_120 0.0144299729 - - Pectinesterase U1 precursor, putative [Ricinus communis]
14 Hb_003549_110 0.0146220936 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
15 Hb_002259_100 0.0202555685 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
16 Hb_001728_090 0.0225603541 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
17 Hb_002986_150 0.0249474132 - - hypothetical protein glysoja_022060 [Glycine soja]
18 Hb_004645_060 0.0251728464 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]
19 Hb_004994_270 0.0343043165 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
20 Hb_014549_030 0.0351351827 - - receptor-kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_137288_010 Hb_137288_010 Hb_003266_110 Hb_003266_110 Hb_137288_010--Hb_003266_110 Hb_000003_800 Hb_000003_800 Hb_137288_010--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_137288_010--Hb_001322_060 Hb_001948_060 Hb_001948_060 Hb_137288_010--Hb_001948_060 Hb_020479_010 Hb_020479_010 Hb_137288_010--Hb_020479_010 Hb_000413_090 Hb_000413_090 Hb_137288_010--Hb_000413_090 Hb_003266_110--Hb_000003_800 Hb_003266_110--Hb_001322_060 Hb_003266_110--Hb_001948_060 Hb_003266_110--Hb_020479_010 Hb_187418_010 Hb_187418_010 Hb_003266_110--Hb_187418_010 Hb_000003_800--Hb_001322_060 Hb_000003_800--Hb_001948_060 Hb_000003_800--Hb_020479_010 Hb_000003_800--Hb_000413_090 Hb_001322_060--Hb_001948_060 Hb_001322_060--Hb_020479_010 Hb_001322_060--Hb_000413_090 Hb_001948_060--Hb_020479_010 Hb_001948_060--Hb_187418_010 Hb_020479_010--Hb_187418_010 Hb_001571_070 Hb_001571_070 Hb_000413_090--Hb_001571_070 Hb_002391_260 Hb_002391_260 Hb_000413_090--Hb_002391_260 Hb_001817_200 Hb_001817_200 Hb_000413_090--Hb_001817_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0889563 0.0392991 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis