Hb_137403_010

Information

Type -
Description -
Location Contig137403: 6750-7574
Sequence    

Annotation

kegg
ID tcc:TCM_020838
description Actin-related protein 9
nr
ID XP_012069796.1
description PREDICTED: actin-related protein 9 [Jatropha curcas]
swissprot
ID Q9LSW2
description Actin-related protein 9 OS=Arabidopsis thaliana GN=ARP9 PE=2 SV=1
trembl
ID A0A067L890
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02297 PE=3 SV=1
Gene Ontology
ID GO:0031011
description actin-related protein 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137403_010 0.0 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
2 Hb_003656_140 0.0745843976 - - PREDICTED: PHD finger protein ALFIN-LIKE 4 isoform X1 [Jatropha curcas]
3 Hb_002023_020 0.078446499 - - PREDICTED: aladin isoform X2 [Jatropha curcas]
4 Hb_002982_040 0.0911868223 - - mta/sah nucleosidase, putative [Ricinus communis]
5 Hb_000364_150 0.0912431548 - - -
6 Hb_005862_010 0.0948972355 - - PREDICTED: riboflavin biosynthesis protein PYRD, chloroplastic [Jatropha curcas]
7 Hb_150360_010 0.0952880605 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
8 Hb_185830_020 0.0966222001 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_006252_010 0.0970960922 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
10 Hb_012305_050 0.0977508916 - - unnamed protein product [Coffea canephora]
11 Hb_050455_010 0.0983213462 - - PREDICTED: prosaposin isoform X2 [Jatropha curcas]
12 Hb_000031_220 0.0989060154 - - PREDICTED: UDP-glycosyltransferase 73B4-like [Jatropha curcas]
13 Hb_002301_280 0.102090542 transcription factor TF Family: SBP hypothetical protein JCGZ_21462 [Jatropha curcas]
14 Hb_003847_080 0.102668721 - - PREDICTED: uncharacterized protein LOC105647792 isoform X3 [Jatropha curcas]
15 Hb_002107_160 0.1027116705 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_000069_160 0.1028901277 - - -
17 Hb_144598_030 0.1029548797 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
18 Hb_187739_020 0.1046149328 - - PREDICTED: B2 protein [Jatropha curcas]
19 Hb_000183_040 0.1058518866 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
20 Hb_000620_080 0.1086529749 - - hypothetical protein F775_32679 [Aegilops tauschii]

Gene co-expression network

sample Hb_137403_010 Hb_137403_010 Hb_003656_140 Hb_003656_140 Hb_137403_010--Hb_003656_140 Hb_002023_020 Hb_002023_020 Hb_137403_010--Hb_002023_020 Hb_002982_040 Hb_002982_040 Hb_137403_010--Hb_002982_040 Hb_000364_150 Hb_000364_150 Hb_137403_010--Hb_000364_150 Hb_005862_010 Hb_005862_010 Hb_137403_010--Hb_005862_010 Hb_150360_010 Hb_150360_010 Hb_137403_010--Hb_150360_010 Hb_003656_140--Hb_002023_020 Hb_041392_010 Hb_041392_010 Hb_003656_140--Hb_041392_010 Hb_187739_020 Hb_187739_020 Hb_003656_140--Hb_187739_020 Hb_003656_140--Hb_150360_010 Hb_000866_030 Hb_000866_030 Hb_003656_140--Hb_000866_030 Hb_039253_010 Hb_039253_010 Hb_002023_020--Hb_039253_010 Hb_002023_020--Hb_000364_150 Hb_000307_200 Hb_000307_200 Hb_002023_020--Hb_000307_200 Hb_071736_010 Hb_071736_010 Hb_002023_020--Hb_071736_010 Hb_000031_220 Hb_000031_220 Hb_002982_040--Hb_000031_220 Hb_050455_010 Hb_050455_010 Hb_002982_040--Hb_050455_010 Hb_185830_020 Hb_185830_020 Hb_002982_040--Hb_185830_020 Hb_002982_040--Hb_187739_020 Hb_002982_040--Hb_000866_030 Hb_000069_160 Hb_000069_160 Hb_002982_040--Hb_000069_160 Hb_000914_070 Hb_000914_070 Hb_000364_150--Hb_000914_070 Hb_000364_150--Hb_039253_010 Hb_004055_140 Hb_004055_140 Hb_000364_150--Hb_004055_140 Hb_009117_030 Hb_009117_030 Hb_000364_150--Hb_009117_030 Hb_004934_070 Hb_004934_070 Hb_005862_010--Hb_004934_070 Hb_000494_040 Hb_000494_040 Hb_005862_010--Hb_000494_040 Hb_144598_030 Hb_144598_030 Hb_005862_010--Hb_144598_030 Hb_004072_020 Hb_004072_020 Hb_005862_010--Hb_004072_020 Hb_003912_090 Hb_003912_090 Hb_005862_010--Hb_003912_090 Hb_150360_010--Hb_041392_010 Hb_150360_010--Hb_004934_070 Hb_000183_040 Hb_000183_040 Hb_150360_010--Hb_000183_040 Hb_002374_020 Hb_002374_020 Hb_150360_010--Hb_002374_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.6775 15.6771 9.46824 25.0344 33.9638 89.3133
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.2487 28.6623 22.7964 21.2475 12.4568

CAGE analysis