Hb_137515_010

Information

Type -
Description -
Location Contig137515: 519-3136
Sequence    

Annotation

kegg
ID pop:POPTR_0004s06050g
description POPTRDRAFT_855146; hypothetical protein
nr
ID XP_011010907.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
swissprot
ID Q39688
description Epidermis-specific secreted glycoprotein EP1 OS=Daucus carota GN=EP1 PE=1 SV=1
trembl
ID B9H2E2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s06050g PE=4 SV=2
Gene Ontology
ID GO:0016772
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137515_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
2 Hb_061365_010 0.031362167 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_053643_010 0.1719055746 - - Zinc finger protein GIS2 [Medicago truncatula]
4 Hb_009922_010 0.191792492 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
5 Hb_093432_020 0.2362253445 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
6 Hb_005203_050 0.2483846125 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
7 Hb_002928_070 0.2513542394 - - -
8 Hb_089341_010 0.2762256774 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
9 Hb_002986_120 0.2766799737 - - -
10 Hb_032018_010 0.2786753961 - - PREDICTED: uncharacterized protein LOC105778873 [Gossypium raimondii]
11 Hb_000062_500 0.2824242535 - - PREDICTED: urease-like [Zea mays]
12 Hb_178613_010 0.2854993238 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
13 Hb_009686_010 0.3104956122 - - mitochondrial thioredoxin 2 [Hevea brasiliensis]
14 Hb_010997_100 0.3373564708 transcription factor TF Family: mTERF -
15 Hb_000322_110 0.3378610383 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 3 [Jatropha curcas]
16 Hb_001279_230 0.338551238 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
17 Hb_002003_110 0.3389342946 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
18 Hb_027255_010 0.3405576528 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]
19 Hb_011794_020 0.3409734618 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
20 Hb_003647_120 0.3454512677 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_137515_010 Hb_137515_010 Hb_061365_010 Hb_061365_010 Hb_137515_010--Hb_061365_010 Hb_053643_010 Hb_053643_010 Hb_137515_010--Hb_053643_010 Hb_009922_010 Hb_009922_010 Hb_137515_010--Hb_009922_010 Hb_093432_020 Hb_093432_020 Hb_137515_010--Hb_093432_020 Hb_005203_050 Hb_005203_050 Hb_137515_010--Hb_005203_050 Hb_002928_070 Hb_002928_070 Hb_137515_010--Hb_002928_070 Hb_061365_010--Hb_053643_010 Hb_061365_010--Hb_009922_010 Hb_061365_010--Hb_093432_020 Hb_061365_010--Hb_002928_070 Hb_061365_010--Hb_005203_050 Hb_053643_010--Hb_009922_010 Hb_053643_010--Hb_093432_020 Hb_053643_010--Hb_002928_070 Hb_001279_230 Hb_001279_230 Hb_053643_010--Hb_001279_230 Hb_009922_010--Hb_093432_020 Hb_009922_010--Hb_002928_070 Hb_009922_010--Hb_005203_050 Hb_093432_020--Hb_002928_070 Hb_004108_010 Hb_004108_010 Hb_093432_020--Hb_004108_010 Hb_000062_500 Hb_000062_500 Hb_005203_050--Hb_000062_500 Hb_032018_010 Hb_032018_010 Hb_005203_050--Hb_032018_010 Hb_033926_010 Hb_033926_010 Hb_005203_050--Hb_033926_010 Hb_009189_030 Hb_009189_030 Hb_005203_050--Hb_009189_030 Hb_005203_050--Hb_053643_010 Hb_002928_070--Hb_004108_010 Hb_002928_070--Hb_001279_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0111881 0 0 0.0105475 0.021981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis