Hb_137862_020

Information

Type -
Description -
Location Contig137862: 20785-22103
Sequence    

Annotation

kegg
ID rcu:RCOM_0220690
description Leucine-rich repeat receptor protein kinase EXS precursor, putative (EC:2.7.11.25)
nr
ID XP_002524452.1
description Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
swissprot
ID P0DH87
description Putative inactive G-type lectin S-receptor-like serine/threonine-protein kinase SRK OS=Arabidopsis thaliana GN=PSEUDOSRKA PE=5 SV=1
trembl
ID B9SEN3
description Leucine-rich repeat receptor protein kinase EXS, putative OS=Ricinus communis GN=RCOM_0220690 PE=4 SV=1
Gene Ontology
ID GO:0005622
description receptor-like serine threonine-protein kinase sd1-8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_137862_020 0.0 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
2 Hb_002163_070 0.0415492411 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
3 Hb_000248_080 0.0444104832 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
4 Hb_023712_020 0.0466354364 transcription factor TF Family: ERF hypothetical protein JCGZ_20669 [Jatropha curcas]
5 Hb_057721_010 0.0583826857 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
6 Hb_009083_020 0.0588866356 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
7 Hb_010252_010 0.0595106596 - - -
8 Hb_119583_030 0.0733481743 - - unnamed protein product [Vitis vinifera]
9 Hb_136973_020 0.0741060449 - - -
10 Hb_160950_010 0.077734884 - - PREDICTED: uncharacterized protein LOC105761043 [Gossypium raimondii]
11 Hb_000170_260 0.0852052039 - - amino acid transporter, putative [Ricinus communis]
12 Hb_006197_010 0.0901417483 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
13 Hb_172983_010 0.0921620089 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000025_800 0.0975172794 - - hypothetical protein VITISV_020143 [Vitis vinifera]
15 Hb_005928_010 0.1060261843 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
16 Hb_000277_030 0.1061663909 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
17 Hb_022465_010 0.1146071838 - - hypothetical protein JCGZ_06012 [Jatropha curcas]
18 Hb_185437_010 0.1159665319 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
19 Hb_000483_120 0.1201739704 transcription factor TF Family: MYB hypothetical protein POPTR_0004s12530g [Populus trichocarpa]
20 Hb_039440_010 0.1215543983 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_137862_020 Hb_137862_020 Hb_002163_070 Hb_002163_070 Hb_137862_020--Hb_002163_070 Hb_000248_080 Hb_000248_080 Hb_137862_020--Hb_000248_080 Hb_023712_020 Hb_023712_020 Hb_137862_020--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_137862_020--Hb_057721_010 Hb_009083_020 Hb_009083_020 Hb_137862_020--Hb_009083_020 Hb_010252_010 Hb_010252_010 Hb_137862_020--Hb_010252_010 Hb_002163_070--Hb_010252_010 Hb_002163_070--Hb_009083_020 Hb_160950_010 Hb_160950_010 Hb_002163_070--Hb_160950_010 Hb_119583_030 Hb_119583_030 Hb_002163_070--Hb_119583_030 Hb_002163_070--Hb_000248_080 Hb_136973_020 Hb_136973_020 Hb_000248_080--Hb_136973_020 Hb_000248_080--Hb_009083_020 Hb_005928_010 Hb_005928_010 Hb_000248_080--Hb_005928_010 Hb_000248_080--Hb_160950_010 Hb_006197_010 Hb_006197_010 Hb_023712_020--Hb_006197_010 Hb_023712_020--Hb_057721_010 Hb_023712_020--Hb_000248_080 Hb_022465_010 Hb_022465_010 Hb_023712_020--Hb_022465_010 Hb_023712_020--Hb_002163_070 Hb_057721_010--Hb_119583_030 Hb_057721_010--Hb_002163_070 Hb_177179_020 Hb_177179_020 Hb_057721_010--Hb_177179_020 Hb_000025_800 Hb_000025_800 Hb_057721_010--Hb_000025_800 Hb_009083_020--Hb_160950_010 Hb_009083_020--Hb_010252_010 Hb_039440_010 Hb_039440_010 Hb_009083_020--Hb_039440_010 Hb_010252_010--Hb_160950_010 Hb_010252_010--Hb_119583_030 Hb_010252_010--Hb_000025_800 Hb_185437_010 Hb_185437_010 Hb_010252_010--Hb_185437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.509536 1.26071 1.25159 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis