Hb_138229_010

Information

Type -
Description -
Location Contig138229: 1515-2580
Sequence    

Annotation

kegg
ID rcu:RCOM_0073080
description class IV chitinase, putative (EC:3.2.1.14)
nr
ID KDP44269.1
description hypothetical protein JCGZ_05736 [Jatropha curcas]
swissprot
ID O04138
description Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2
trembl
ID A0A067LJ50
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05736 PE=4 SV=1
Gene Ontology
ID GO:0004568
description chitinase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10520: 1480-2578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138229_010 0.0 - - hypothetical protein JCGZ_05736 [Jatropha curcas]
2 Hb_000560_060 0.1418123372 - - PREDICTED: endochitinase PR4-like [Jatropha curcas]
3 Hb_004709_030 0.161914575 - - PREDICTED: receptor-like protein 12 [Vitis vinifera]
4 Hb_005455_010 0.1812476273 - - PREDICTED: probable acyl-activating enzyme 18, peroxisomal isoform X1 [Jatropha curcas]
5 Hb_001226_100 0.1863540186 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
6 Hb_002701_170 0.1863918487 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
7 Hb_001186_120 0.1865569903 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
8 Hb_000365_440 0.1885869977 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
9 Hb_002151_150 0.1912852057 - - PREDICTED: uncharacterized protein LOC102707106 [Oryza brachyantha]
10 Hb_010678_010 0.1946023827 - - PREDICTED: alpha-glucosidase-like [Jatropha curcas]
11 Hb_005622_030 0.1999260016 - - transferase, putative [Ricinus communis]
12 Hb_005357_180 0.2015389998 - - hypothetical protein POPTR_0011s00490g [Populus trichocarpa]
13 Hb_000215_130 0.2021939778 - - PREDICTED: probable pectinesterase 53 [Jatropha curcas]
14 Hb_005050_030 0.2046422041 - - PREDICTED: wall-associated receptor kinase 2-like [Jatropha curcas]
15 Hb_003159_070 0.2051933108 - - Uncharacterized protein TCM_035723 [Theobroma cacao]
16 Hb_000072_110 0.2069615336 - - PREDICTED: U-box domain-containing protein 35 [Jatropha curcas]
17 Hb_000087_120 0.2070339364 - - AMP dependent CoA ligase, putative [Ricinus communis]
18 Hb_006789_020 0.2080846909 - - PREDICTED: LOW QUALITY PROTEIN: wall-associated receptor kinase-like 22 [Camelina sativa]
19 Hb_006916_130 0.2096778851 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
20 Hb_000755_090 0.2097103579 - - transferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_138229_010 Hb_138229_010 Hb_000560_060 Hb_000560_060 Hb_138229_010--Hb_000560_060 Hb_004709_030 Hb_004709_030 Hb_138229_010--Hb_004709_030 Hb_005455_010 Hb_005455_010 Hb_138229_010--Hb_005455_010 Hb_001226_100 Hb_001226_100 Hb_138229_010--Hb_001226_100 Hb_002701_170 Hb_002701_170 Hb_138229_010--Hb_002701_170 Hb_001186_120 Hb_001186_120 Hb_138229_010--Hb_001186_120 Hb_000560_060--Hb_002701_170 Hb_010678_010 Hb_010678_010 Hb_000560_060--Hb_010678_010 Hb_002151_150 Hb_002151_150 Hb_000560_060--Hb_002151_150 Hb_000072_110 Hb_000072_110 Hb_000560_060--Hb_000072_110 Hb_005050_030 Hb_005050_030 Hb_000560_060--Hb_005050_030 Hb_002701_060 Hb_002701_060 Hb_000560_060--Hb_002701_060 Hb_000365_440 Hb_000365_440 Hb_004709_030--Hb_000365_440 Hb_019278_010 Hb_019278_010 Hb_004709_030--Hb_019278_010 Hb_000087_120 Hb_000087_120 Hb_004709_030--Hb_000087_120 Hb_004709_030--Hb_001186_120 Hb_026419_010 Hb_026419_010 Hb_004709_030--Hb_026419_010 Hb_170023_010 Hb_170023_010 Hb_004709_030--Hb_170023_010 Hb_002811_240 Hb_002811_240 Hb_005455_010--Hb_002811_240 Hb_000699_050 Hb_000699_050 Hb_005455_010--Hb_000699_050 Hb_005455_010--Hb_001226_100 Hb_007007_130 Hb_007007_130 Hb_005455_010--Hb_007007_130 Hb_000152_770 Hb_000152_770 Hb_005455_010--Hb_000152_770 Hb_000336_280 Hb_000336_280 Hb_001226_100--Hb_000336_280 Hb_000215_130 Hb_000215_130 Hb_001226_100--Hb_000215_130 Hb_001226_100--Hb_001186_120 Hb_001832_110 Hb_001832_110 Hb_001226_100--Hb_001832_110 Hb_001439_040 Hb_001439_040 Hb_001226_100--Hb_001439_040 Hb_005333_210 Hb_005333_210 Hb_001226_100--Hb_005333_210 Hb_002701_170--Hb_002701_060 Hb_006789_020 Hb_006789_020 Hb_002701_170--Hb_006789_020 Hb_002701_170--Hb_010678_010 Hb_002701_170--Hb_000072_110 Hb_002701_170--Hb_002151_150 Hb_001186_120--Hb_000215_130 Hb_000880_040 Hb_000880_040 Hb_001186_120--Hb_000880_040 Hb_009102_010 Hb_009102_010 Hb_001186_120--Hb_009102_010 Hb_001186_120--Hb_000336_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.210602 13.6053 1.81694 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.76902 0.251962 0 11.0814 9.64649

CAGE analysis