Hb_138358_010

Information

Type -
Description -
Location Contig138358: 910-2691
Sequence    

Annotation

kegg
ID mtr:MTR_6g081210
description hypothetical protein
nr
ID XP_012065777.1
description PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NUA7
description JHL22C18.10 protein OS=Jatropha curcas GN=JHL22C18.10 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138358_010 0.0 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
2 Hb_003147_030 0.0002332282 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
3 Hb_004642_010 0.0003620424 - - Integrase core domain, putative [Oryza sativa Japonica Group]
4 Hb_000270_570 0.0029064082 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
5 Hb_004724_110 0.0039014859 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
6 Hb_000922_230 0.007261371 - - -
7 Hb_001768_030 0.0090321795 - - -
8 Hb_001827_020 0.0129773879 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_011269_050 0.0137571099 - - -
10 Hb_077421_010 0.0156474195 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
11 Hb_002028_080 0.0158635736 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
12 Hb_000017_010 0.0162638096 - - -
13 Hb_003494_170 0.016627469 - - -
14 Hb_004994_060 0.0191922093 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
15 Hb_007945_040 0.0500150337 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_006642_010 0.0696904268 - - -
17 Hb_111985_020 0.1252247719 - - -
18 Hb_002659_100 0.1267221493 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
19 Hb_000640_010 0.1308533051 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
20 Hb_011639_140 0.1327272339 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]

Gene co-expression network

sample Hb_138358_010 Hb_138358_010 Hb_003147_030 Hb_003147_030 Hb_138358_010--Hb_003147_030 Hb_004642_010 Hb_004642_010 Hb_138358_010--Hb_004642_010 Hb_000270_570 Hb_000270_570 Hb_138358_010--Hb_000270_570 Hb_004724_110 Hb_004724_110 Hb_138358_010--Hb_004724_110 Hb_000922_230 Hb_000922_230 Hb_138358_010--Hb_000922_230 Hb_001768_030 Hb_001768_030 Hb_138358_010--Hb_001768_030 Hb_003147_030--Hb_004642_010 Hb_003147_030--Hb_000270_570 Hb_003147_030--Hb_004724_110 Hb_003147_030--Hb_000922_230 Hb_003147_030--Hb_001768_030 Hb_004642_010--Hb_000270_570 Hb_004642_010--Hb_004724_110 Hb_004642_010--Hb_000922_230 Hb_004642_010--Hb_001768_030 Hb_000270_570--Hb_004724_110 Hb_000270_570--Hb_000922_230 Hb_000270_570--Hb_001768_030 Hb_004724_110--Hb_000922_230 Hb_004724_110--Hb_001768_030 Hb_000922_230--Hb_001768_030 Hb_001827_020 Hb_001827_020 Hb_000922_230--Hb_001827_020 Hb_011269_050 Hb_011269_050 Hb_000922_230--Hb_011269_050 Hb_001768_030--Hb_001827_020 Hb_001768_030--Hb_011269_050 Hb_077421_010 Hb_077421_010 Hb_001768_030--Hb_077421_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0113046 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00804555 0

CAGE analysis