Hb_138575_010

Information

Type -
Description -
Location Contig138575: 233-655
Sequence    

Annotation

kegg
ID rcu:RCOM_0885080
description Disease resistance protein RPS5, putative
nr
ID XP_011023525.1
description PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S9G0
description Disease resistance protein RPS5, putative OS=Ricinus communis GN=RCOM_0885080 PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138575_010 0.0 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
2 Hb_048653_020 0.1284032998 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_102100_010 0.1341830748 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_009897_020 0.1437659381 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
5 Hb_116635_010 0.1535074816 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_000015_180 0.1550341395 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
7 Hb_001504_270 0.1565683249 - - PREDICTED: pleiotropic drug resistance protein 1-like [Jatropha curcas]
8 Hb_056012_010 0.1590420962 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
9 Hb_002918_150 0.1630124947 transcription factor TF Family: ERF ethylene-responsive element binding protein 1 [Hevea brasiliensis]
10 Hb_033642_070 0.1710466603 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
11 Hb_000220_090 0.1716416827 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
12 Hb_000960_010 0.1725924376 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
13 Hb_002686_400 0.1781299803 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
14 Hb_007137_030 0.1797627151 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.3-like [Jatropha curcas]
15 Hb_162074_010 0.1816748567 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_011120_020 0.181726265 - - PREDICTED: casein kinase I-like isoform X1 [Jatropha curcas]
17 Hb_042553_010 0.1818509853 - - PREDICTED: glutathione S-transferase T1-like [Jatropha curcas]
18 Hb_004800_190 0.1853062869 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
19 Hb_002760_040 0.1858262985 - - PREDICTED: uncharacterized protein LOC105641234 [Jatropha curcas]
20 Hb_001248_110 0.1890203983 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]

Gene co-expression network

sample Hb_138575_010 Hb_138575_010 Hb_048653_020 Hb_048653_020 Hb_138575_010--Hb_048653_020 Hb_102100_010 Hb_102100_010 Hb_138575_010--Hb_102100_010 Hb_009897_020 Hb_009897_020 Hb_138575_010--Hb_009897_020 Hb_116635_010 Hb_116635_010 Hb_138575_010--Hb_116635_010 Hb_000015_180 Hb_000015_180 Hb_138575_010--Hb_000015_180 Hb_001504_270 Hb_001504_270 Hb_138575_010--Hb_001504_270 Hb_002918_150 Hb_002918_150 Hb_048653_020--Hb_002918_150 Hb_013057_030 Hb_013057_030 Hb_048653_020--Hb_013057_030 Hb_002217_440 Hb_002217_440 Hb_048653_020--Hb_002217_440 Hb_003086_050 Hb_003086_050 Hb_048653_020--Hb_003086_050 Hb_002272_140 Hb_002272_140 Hb_048653_020--Hb_002272_140 Hb_056012_010 Hb_056012_010 Hb_102100_010--Hb_056012_010 Hb_102100_010--Hb_000015_180 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_000220_090 Hb_000220_090 Hb_102100_010--Hb_000220_090 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_162074_010 Hb_162074_010 Hb_009897_020--Hb_162074_010 Hb_004800_190 Hb_004800_190 Hb_009897_020--Hb_004800_190 Hb_002760_040 Hb_002760_040 Hb_009897_020--Hb_002760_040 Hb_001865_060 Hb_001865_060 Hb_009897_020--Hb_001865_060 Hb_002686_400 Hb_002686_400 Hb_009897_020--Hb_002686_400 Hb_001141_360 Hb_001141_360 Hb_009897_020--Hb_001141_360 Hb_042553_010 Hb_042553_010 Hb_116635_010--Hb_042553_010 Hb_003893_020 Hb_003893_020 Hb_116635_010--Hb_003893_020 Hb_006911_060 Hb_006911_060 Hb_116635_010--Hb_006911_060 Hb_000940_020 Hb_000940_020 Hb_116635_010--Hb_000940_020 Hb_012702_010 Hb_012702_010 Hb_116635_010--Hb_012702_010 Hb_000015_180--Hb_000220_090 Hb_002835_260 Hb_002835_260 Hb_000015_180--Hb_002835_260 Hb_000434_050 Hb_000434_050 Hb_000015_180--Hb_000434_050 Hb_003038_010 Hb_003038_010 Hb_000015_180--Hb_003038_010 Hb_011120_020 Hb_011120_020 Hb_000015_180--Hb_011120_020 Hb_001504_270--Hb_006911_060 Hb_000181_080 Hb_000181_080 Hb_001504_270--Hb_000181_080 Hb_000172_080 Hb_000172_080 Hb_001504_270--Hb_000172_080 Hb_001345_030 Hb_001345_030 Hb_001504_270--Hb_001345_030 Hb_000397_090 Hb_000397_090 Hb_001504_270--Hb_000397_090 Hb_078901_010 Hb_078901_010 Hb_001504_270--Hb_078901_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.10408 58.2141 2.88308 8.04581 3.93872 2.31703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.25584 0.563658 0.91717 6.15821 1.51297

CAGE analysis