Hb_138585_010

Information

Type transcription factor
Description TF Family: NAC
Location Contig138585: 4697-5710
Sequence    

Annotation

kegg
ID rcu:RCOM_1504850
description transcription factor, putative
nr
ID XP_012090627.1
description PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
swissprot
ID O49255
description NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1
trembl
ID R4NEP6
description NAC transcription factor 010 OS=Jatropha curcas GN=JCGZ_26399 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_010 0.0 transcription factor TF Family: NAC PREDICTED: NAC transcription factor ONAC010 [Jatropha curcas]
2 Hb_004804_010 0.0592984406 - - PREDICTED: trans-resveratrol di-O-methyltransferase-like [Populus euphratica]
3 Hb_006846_040 0.0730629482 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
4 Hb_001534_140 0.0795403319 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105642310 [Jatropha curcas]
5 Hb_000417_210 0.0835349743 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_009252_070 0.0867382093 - - hypothetical protein JCGZ_11488 [Jatropha curcas]
7 Hb_000903_040 0.0879754033 - - PREDICTED: pirin-like protein [Jatropha curcas]
8 Hb_012395_060 0.0912781157 - - PREDICTED: actin-related protein 2/3 complex subunit 2B [Jatropha curcas]
9 Hb_000676_230 0.0917731355 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
10 Hb_143629_170 0.095129919 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
11 Hb_006242_050 0.0967248919 - - Osmotin precursor, putative [Ricinus communis]
12 Hb_053264_010 0.099297012 - - beta glucosidase [Hevea brasiliensis]
13 Hb_027506_030 0.099650592 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
14 Hb_011709_010 0.1015181588 - - PREDICTED: phytosulfokine receptor 1-like [Jatropha curcas]
15 Hb_000368_050 0.1024493076 - - beta-galactosidase, putative [Ricinus communis]
16 Hb_085962_010 0.1036574662 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
17 Hb_169077_030 0.1062260675 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]
18 Hb_010142_060 0.106440861 - - Blue copper protein precursor, putative [Ricinus communis]
19 Hb_000364_090 0.1088736264 - - PREDICTED: filament-like plant protein 7 isoform X2 [Jatropha curcas]
20 Hb_005269_060 0.1142414471 - - PREDICTED: rac-like GTP-binding protein RAC2 [Cicer arietinum]

Gene co-expression network

sample Hb_138585_010 Hb_138585_010 Hb_004804_010 Hb_004804_010 Hb_138585_010--Hb_004804_010 Hb_006846_040 Hb_006846_040 Hb_138585_010--Hb_006846_040 Hb_001534_140 Hb_001534_140 Hb_138585_010--Hb_001534_140 Hb_000417_210 Hb_000417_210 Hb_138585_010--Hb_000417_210 Hb_009252_070 Hb_009252_070 Hb_138585_010--Hb_009252_070 Hb_000903_040 Hb_000903_040 Hb_138585_010--Hb_000903_040 Hb_027506_030 Hb_027506_030 Hb_004804_010--Hb_027506_030 Hb_085962_010 Hb_085962_010 Hb_004804_010--Hb_085962_010 Hb_012395_060 Hb_012395_060 Hb_004804_010--Hb_012395_060 Hb_010264_020 Hb_010264_020 Hb_004804_010--Hb_010264_020 Hb_169077_030 Hb_169077_030 Hb_004804_010--Hb_169077_030 Hb_053264_010 Hb_053264_010 Hb_006846_040--Hb_053264_010 Hb_000103_450 Hb_000103_450 Hb_006846_040--Hb_000103_450 Hb_001047_090 Hb_001047_090 Hb_006846_040--Hb_001047_090 Hb_010962_020 Hb_010962_020 Hb_006846_040--Hb_010962_020 Hb_006846_040--Hb_000903_040 Hb_010142_060 Hb_010142_060 Hb_001534_140--Hb_010142_060 Hb_000368_050 Hb_000368_050 Hb_001534_140--Hb_000368_050 Hb_005332_160 Hb_005332_160 Hb_001534_140--Hb_005332_160 Hb_001534_140--Hb_169077_030 Hb_001534_140--Hb_012395_060 Hb_000364_090 Hb_000364_090 Hb_000417_210--Hb_000364_090 Hb_000417_210--Hb_000903_040 Hb_000676_230 Hb_000676_230 Hb_000417_210--Hb_000676_230 Hb_000417_210--Hb_004804_010 Hb_012484_050 Hb_012484_050 Hb_000417_210--Hb_012484_050 Hb_047612_010 Hb_047612_010 Hb_009252_070--Hb_047612_010 Hb_009252_070--Hb_000368_050 Hb_005269_060 Hb_005269_060 Hb_009252_070--Hb_005269_060 Hb_004650_110 Hb_004650_110 Hb_009252_070--Hb_004650_110 Hb_000103_440 Hb_000103_440 Hb_009252_070--Hb_000103_440 Hb_000903_040--Hb_053264_010 Hb_000903_040--Hb_000676_230 Hb_009783_010 Hb_009783_010 Hb_000903_040--Hb_009783_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.194221 2.02558 5.88809 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.531725 3.34936

CAGE analysis