Hb_138585_030

Information

Type -
Description -
Location Contig138585: 11439-16846
Sequence    

Annotation

kegg
ID rcu:RCOM_1504830
description DNA binding protein, putative (EC:2.7.11.23)
nr
ID XP_012090624.1
description PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
swissprot
ID Q9ZVM9
description Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1
trembl
ID A0A067JIA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26394 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable serine threonine-protein kinase at1g54610

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10552: 11505-16971 , PASA_asmbl_10553: 11387-17153
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_030 0.0 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
2 Hb_004705_160 0.0698495399 - - PREDICTED: protein MEI2-like 4 [Jatropha curcas]
3 Hb_010344_020 0.0753677824 - - PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Jatropha curcas]
4 Hb_000116_250 0.0761457922 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
5 Hb_000579_040 0.0789175694 - - PREDICTED: putative GTP-binding protein 6 [Jatropha curcas]
6 Hb_010620_050 0.0802519517 - - PREDICTED: uncharacterized protein LOC105646119 [Jatropha curcas]
7 Hb_068804_090 0.0832520874 - - PREDICTED: probable cytosolic oligopeptidase A [Jatropha curcas]
8 Hb_030736_040 0.0842430146 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
9 Hb_003994_080 0.0850962441 - - PREDICTED: uncharacterized protein LOC105634384 [Jatropha curcas]
10 Hb_003355_010 0.0865576062 - - Heat shock 70 kDa protein, putative [Ricinus communis]
11 Hb_032631_070 0.0865701383 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
12 Hb_002783_190 0.0886426486 - - PREDICTED: uncharacterized protein LOC105635339 [Jatropha curcas]
13 Hb_001307_100 0.0889787928 - - calmodulin binding protein, putative [Ricinus communis]
14 Hb_000094_100 0.0890693872 - - PREDICTED: probable methyltransferase PMT28 [Jatropha curcas]
15 Hb_000748_090 0.0893509651 - - glucose inhibited division protein A, putative [Ricinus communis]
16 Hb_000025_540 0.0897390995 - - PREDICTED: uncharacterized protein LOC104879644 [Vitis vinifera]
17 Hb_000208_190 0.0899832308 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
18 Hb_005000_080 0.0909676122 - - PREDICTED: thioredoxin-like 2, chloroplastic [Populus euphratica]
19 Hb_002915_010 0.0913082316 - - PREDICTED: transcriptional activator DEMETER isoform X1 [Jatropha curcas]
20 Hb_009288_040 0.0922508316 - - PREDICTED: uncharacterized protein LOC105648677 [Jatropha curcas]

Gene co-expression network

sample Hb_138585_030 Hb_138585_030 Hb_004705_160 Hb_004705_160 Hb_138585_030--Hb_004705_160 Hb_010344_020 Hb_010344_020 Hb_138585_030--Hb_010344_020 Hb_000116_250 Hb_000116_250 Hb_138585_030--Hb_000116_250 Hb_000579_040 Hb_000579_040 Hb_138585_030--Hb_000579_040 Hb_010620_050 Hb_010620_050 Hb_138585_030--Hb_010620_050 Hb_068804_090 Hb_068804_090 Hb_138585_030--Hb_068804_090 Hb_000862_100 Hb_000862_100 Hb_004705_160--Hb_000862_100 Hb_000208_190 Hb_000208_190 Hb_004705_160--Hb_000208_190 Hb_000748_090 Hb_000748_090 Hb_004705_160--Hb_000748_090 Hb_068079_010 Hb_068079_010 Hb_004705_160--Hb_068079_010 Hb_000788_030 Hb_000788_030 Hb_004705_160--Hb_000788_030 Hb_005147_080 Hb_005147_080 Hb_010344_020--Hb_005147_080 Hb_011861_050 Hb_011861_050 Hb_010344_020--Hb_011861_050 Hb_002915_010 Hb_002915_010 Hb_010344_020--Hb_002915_010 Hb_010344_020--Hb_000208_190 Hb_000094_100 Hb_000094_100 Hb_010344_020--Hb_000094_100 Hb_001390_100 Hb_001390_100 Hb_000116_250--Hb_001390_100 Hb_000585_110 Hb_000585_110 Hb_000116_250--Hb_000585_110 Hb_003355_010 Hb_003355_010 Hb_000116_250--Hb_003355_010 Hb_003440_020 Hb_003440_020 Hb_000116_250--Hb_003440_020 Hb_000007_090 Hb_000007_090 Hb_000116_250--Hb_000007_090 Hb_032631_070 Hb_032631_070 Hb_000579_040--Hb_032631_070 Hb_025194_090 Hb_025194_090 Hb_000579_040--Hb_025194_090 Hb_002075_030 Hb_002075_030 Hb_000579_040--Hb_002075_030 Hb_001307_100 Hb_001307_100 Hb_000579_040--Hb_001307_100 Hb_001143_100 Hb_001143_100 Hb_000579_040--Hb_001143_100 Hb_002107_050 Hb_002107_050 Hb_010620_050--Hb_002107_050 Hb_012779_080 Hb_012779_080 Hb_010620_050--Hb_012779_080 Hb_003071_030 Hb_003071_030 Hb_010620_050--Hb_003071_030 Hb_160271_010 Hb_160271_010 Hb_010620_050--Hb_160271_010 Hb_009288_040 Hb_009288_040 Hb_010620_050--Hb_009288_040 Hb_068804_090--Hb_000748_090 Hb_013749_050 Hb_013749_050 Hb_068804_090--Hb_013749_050 Hb_007012_030 Hb_007012_030 Hb_068804_090--Hb_007012_030 Hb_000243_120 Hb_000243_120 Hb_068804_090--Hb_000243_120 Hb_030736_040 Hb_030736_040 Hb_068804_090--Hb_030736_040 Hb_004629_030 Hb_004629_030 Hb_068804_090--Hb_004629_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79895 6.76675 19.0835 12.3991 4.37146 4.17985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.50977 4.52544 6.08101 7.17354 21.4228

CAGE analysis