Hb_138585_040

Information

Type -
Description -
Location Contig138585: 22089-22841
Sequence    

Annotation

kegg
ID tcc:TCM_005989
description 20S proteasome alpha subunit C1 isoform 1
nr
ID XP_012090623.1
description PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
swissprot
ID P52427
description Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1
trembl
ID A0A067JFE3
description Proteasome subunit alpha type OS=Jatropha curcas GN=JCGZ_26393 PE=3 SV=1
Gene Ontology
ID GO:0005634
description proteasome subunit alpha type-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10555: 20527-23162
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_040 0.0 - - PREDICTED: proteasome subunit alpha type-4 [Jatropha curcas]
2 Hb_000049_050 0.0668348922 - - PREDICTED: uncharacterized protein LOC105644474 [Jatropha curcas]
3 Hb_001172_100 0.0707761149 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3-like isoform X1 [Jatropha curcas]
4 Hb_002324_010 0.0846946357 - - PREDICTED: proteasome subunit alpha type-7 [Jatropha curcas]
5 Hb_000384_120 0.089196124 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial [Jatropha curcas]
6 Hb_002631_260 0.0899694278 - - PREDICTED: proteasome subunit alpha type-2-A [Jatropha curcas]
7 Hb_005278_040 0.0904690206 - - PREDICTED: sorcin-like isoform X1 [Populus euphratica]
8 Hb_001157_080 0.0917701795 - - zinc finger protein, putative [Ricinus communis]
9 Hb_000707_020 0.0962855295 - - hypothetical protein B456_002G255500 [Gossypium raimondii]
10 Hb_000417_260 0.0996271707 - - protein with unknown function [Ricinus communis]
11 Hb_005496_090 0.1053531674 - - PREDICTED: adenine phosphoribosyltransferase 1-like [Jatropha curcas]
12 Hb_005045_070 0.1074383241 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
13 Hb_000302_280 0.1080518708 - - hypothetical protein ZEAMMB73_772347 [Zea mays]
14 Hb_003291_020 0.1093064194 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
15 Hb_001005_080 0.1130060278 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
16 Hb_148209_010 0.1132892161 - - RAS-related GTP-binding family protein [Populus trichocarpa]
17 Hb_000574_130 0.1142963901 - - calcineurin-like protein [Hevea brasiliensis]
18 Hb_001410_060 0.1148520438 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 8 homolog A-like [Jatropha curcas]
19 Hb_072922_020 0.1159512432 - - SNARE-like superfamily protein [Theobroma cacao]
20 Hb_004659_060 0.1183352479 - - RAS-related GTP-binding family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_138585_040 Hb_138585_040 Hb_000049_050 Hb_000049_050 Hb_138585_040--Hb_000049_050 Hb_001172_100 Hb_001172_100 Hb_138585_040--Hb_001172_100 Hb_002324_010 Hb_002324_010 Hb_138585_040--Hb_002324_010 Hb_000384_120 Hb_000384_120 Hb_138585_040--Hb_000384_120 Hb_002631_260 Hb_002631_260 Hb_138585_040--Hb_002631_260 Hb_005278_040 Hb_005278_040 Hb_138585_040--Hb_005278_040 Hb_000049_050--Hb_002631_260 Hb_000260_790 Hb_000260_790 Hb_000049_050--Hb_000260_790 Hb_000707_020 Hb_000707_020 Hb_000049_050--Hb_000707_020 Hb_000049_050--Hb_001172_100 Hb_005045_070 Hb_005045_070 Hb_000049_050--Hb_005045_070 Hb_001172_100--Hb_000384_120 Hb_001172_100--Hb_002324_010 Hb_001225_010 Hb_001225_010 Hb_001172_100--Hb_001225_010 Hb_001172_100--Hb_005045_070 Hb_001157_080 Hb_001157_080 Hb_001172_100--Hb_001157_080 Hb_003376_190 Hb_003376_190 Hb_002324_010--Hb_003376_190 Hb_002324_010--Hb_005045_070 Hb_002324_010--Hb_000384_120 Hb_072922_020 Hb_072922_020 Hb_002324_010--Hb_072922_020 Hb_000384_120--Hb_072922_020 Hb_000417_260 Hb_000417_260 Hb_000384_120--Hb_000417_260 Hb_003880_030 Hb_003880_030 Hb_000384_120--Hb_003880_030 Hb_000922_040 Hb_000922_040 Hb_000384_120--Hb_000922_040 Hb_005269_080 Hb_005269_080 Hb_000384_120--Hb_005269_080 Hb_002631_260--Hb_002324_010 Hb_002631_260--Hb_000260_790 Hb_001410_060 Hb_001410_060 Hb_002631_260--Hb_001410_060 Hb_003880_040 Hb_003880_040 Hb_002631_260--Hb_003880_040 Hb_005278_040--Hb_000417_260 Hb_001008_090 Hb_001008_090 Hb_005278_040--Hb_001008_090 Hb_005278_040--Hb_002324_010 Hb_005278_040--Hb_000384_120 Hb_000056_250 Hb_000056_250 Hb_005278_040--Hb_000056_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0909 15.2456 18.0836 88.8605 10.9284 25.8311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
83.146 169.184 93.6571 58.0327 29.7294

CAGE analysis