Hb_138585_050

Information

Type -
Description -
Location Contig138585: 31018-34834
Sequence    

Annotation

kegg
ID rcu:RCOM_1504700
description ubiquitin-conjugating enzyme E2-25kD, putative (EC:6.3.2.19)
nr
ID XP_002511117.1
description ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
swissprot
ID Q9FI61
description Ubiquitin-conjugating enzyme E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1
trembl
ID B9RA92
description Ubiquitin-conjugating enzyme E2-25kD, putative OS=Ricinus communis GN=RCOM_1504700 PE=3 SV=1
Gene Ontology
ID GO:0016874
description ubiquitin-conjugating enzyme e2 27

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10558: 31001-34836 , PASA_asmbl_10560: 32694-34815
cDNA
(Sanger)
(ID:Location)		 007_K10.ab1: 31253-34776 , 014_A11.ab1: 32891-34779 , 018_K09.ab1: 31288-34776 , 031_D02.ab1: 31363-34776 , 034_M23.ab1: 31280-34776 , 038_H02.ab1: 31365-34836 , 045_L05.ab1: 31385-34776

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_050 0.0 - - ubiquitin-conjugating enzyme E2-25kD, putative [Ricinus communis]
2 Hb_001491_010 0.0766013638 - - PREDICTED: uncharacterized protein LOC105649805 [Jatropha curcas]
3 Hb_000320_180 0.0931009541 - - PREDICTED: uncharacterized protein LOC105649315 [Jatropha curcas]
4 Hb_008554_070 0.0948605589 - - PREDICTED: peroxisome biogenesis protein 3-2 isoform X2 [Jatropha curcas]
5 Hb_000210_220 0.0996651181 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
6 Hb_024714_010 0.109378378 - - HSP20-like chaperones superfamily protein isoform 1 [Theobroma cacao]
7 Hb_004871_040 0.1160640759 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
8 Hb_011909_100 0.1186995066 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003336_030 0.1202623069 - - transcription factor, putative [Ricinus communis]
10 Hb_004125_040 0.1212072227 - - -
11 Hb_002016_120 0.1226555442 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
12 Hb_001083_020 0.1227091926 - - -
13 Hb_000979_200 0.1232163064 - - PREDICTED: uncharacterized protein LOC105634088 [Jatropha curcas]
14 Hb_000680_140 0.1239765427 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
15 Hb_001775_110 0.124502537 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Jatropha curcas]
16 Hb_003581_100 0.1250363496 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
17 Hb_116894_020 0.1257503076 - - hypothetical protein POPTR_0008s07660g [Populus trichocarpa]
18 Hb_009421_040 0.1258862191 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
19 Hb_004317_040 0.1260405101 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
20 Hb_002016_100 0.12970442 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]

Gene co-expression network

sample Hb_138585_050 Hb_138585_050 Hb_001491_010 Hb_001491_010 Hb_138585_050--Hb_001491_010 Hb_000320_180 Hb_000320_180 Hb_138585_050--Hb_000320_180 Hb_008554_070 Hb_008554_070 Hb_138585_050--Hb_008554_070 Hb_000210_220 Hb_000210_220 Hb_138585_050--Hb_000210_220 Hb_024714_010 Hb_024714_010 Hb_138585_050--Hb_024714_010 Hb_004871_040 Hb_004871_040 Hb_138585_050--Hb_004871_040 Hb_004125_040 Hb_004125_040 Hb_001491_010--Hb_004125_040 Hb_021576_030 Hb_021576_030 Hb_001491_010--Hb_021576_030 Hb_001491_010--Hb_000210_220 Hb_001439_060 Hb_001439_060 Hb_001491_010--Hb_001439_060 Hb_001491_010--Hb_008554_070 Hb_004459_040 Hb_004459_040 Hb_000320_180--Hb_004459_040 Hb_024714_050 Hb_024714_050 Hb_000320_180--Hb_024714_050 Hb_000042_200 Hb_000042_200 Hb_000320_180--Hb_000042_200 Hb_002687_170 Hb_002687_170 Hb_000320_180--Hb_002687_170 Hb_004846_090 Hb_004846_090 Hb_000320_180--Hb_004846_090 Hb_008554_070--Hb_024714_010 Hb_002016_120 Hb_002016_120 Hb_008554_070--Hb_002016_120 Hb_020000_010 Hb_020000_010 Hb_008554_070--Hb_020000_010 Hb_001235_030 Hb_001235_030 Hb_008554_070--Hb_001235_030 Hb_025240_040 Hb_025240_040 Hb_008554_070--Hb_025240_040 Hb_011909_100 Hb_011909_100 Hb_008554_070--Hb_011909_100 Hb_001083_020 Hb_001083_020 Hb_000210_220--Hb_001083_020 Hb_003349_080 Hb_003349_080 Hb_000210_220--Hb_003349_080 Hb_061802_010 Hb_061802_010 Hb_000210_220--Hb_061802_010 Hb_000979_200 Hb_000979_200 Hb_000210_220--Hb_000979_200 Hb_024714_010--Hb_020000_010 Hb_024714_010--Hb_002016_120 Hb_006117_070 Hb_006117_070 Hb_024714_010--Hb_006117_070 Hb_024714_010--Hb_025240_040 Hb_024185_020 Hb_024185_020 Hb_024714_010--Hb_024185_020 Hb_001117_090 Hb_001117_090 Hb_004871_040--Hb_001117_090 Hb_002798_020 Hb_002798_020 Hb_004871_040--Hb_002798_020 Hb_009421_040 Hb_009421_040 Hb_004871_040--Hb_009421_040 Hb_004800_120 Hb_004800_120 Hb_004871_040--Hb_004800_120 Hb_003581_100 Hb_003581_100 Hb_004871_040--Hb_003581_100 Hb_087749_010 Hb_087749_010 Hb_004871_040--Hb_087749_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.8905 4.48347 14.6701 18.147 25.8929 36.8487
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
66.8456 67.0307 44.0877 10.7484 44.2207

CAGE analysis