Hb_138585_060

Information

Type -
Description -
Location Contig138585: 41544-47119
Sequence    

Annotation

kegg
ID rcu:RCOM_1504690
description hypothetical protein
nr
ID XP_012090620.1
description PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
swissprot
ID Q5BIM2
description Protein FAM214B OS=Bos taurus GN=FAM214B PE=2 SV=1
trembl
ID A0A067JRD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26391 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10562: 41587-47097
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_060 0.0 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
2 Hb_021409_030 0.0721452162 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
3 Hb_000072_080 0.0789104126 - - PREDICTED: probable ribosomal protein S11, mitochondrial [Jatropha curcas]
4 Hb_000258_170 0.0861682 - - PREDICTED: uncharacterized protein LOC105630437 [Jatropha curcas]
5 Hb_001141_030 0.0876412514 - - hypothetical protein PRUPE_ppa024854mg [Prunus persica]
6 Hb_007100_030 0.0887840948 - - 40S ribosomal protein S17B [Hevea brasiliensis]
7 Hb_000479_010 0.0908071546 - - PREDICTED: 40S ribosomal protein S19-3-like [Eucalyptus grandis]
8 Hb_000377_060 0.0923533731 - - ARF GTPase activator, putative [Ricinus communis]
9 Hb_012753_160 0.0934147425 - - ara4-interacting protein, putative [Ricinus communis]
10 Hb_000302_220 0.0936655806 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
11 Hb_004375_140 0.0944344188 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
12 Hb_001140_060 0.0967347145 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
13 Hb_003203_040 0.0967738162 - - PREDICTED: transcription initiation factor TFIID subunit 7 [Vitis vinifera]
14 Hb_129204_030 0.0967872587 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
15 Hb_003455_040 0.0971410996 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
16 Hb_000029_200 0.097367261 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
17 Hb_000441_190 0.0982082268 - - PREDICTED: GDP-L-galactose phosphorylase 1-like isoform X2 [Vitis vinifera]
18 Hb_001842_040 0.0984695187 - - PREDICTED: uncharacterized protein LOC100800807 isoform X2 [Glycine max]
19 Hb_003994_250 0.1016514418 - - membrane associated ring finger 1,8, putative [Ricinus communis]
20 Hb_003893_050 0.1023632525 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_138585_060 Hb_138585_060 Hb_021409_030 Hb_021409_030 Hb_138585_060--Hb_021409_030 Hb_000072_080 Hb_000072_080 Hb_138585_060--Hb_000072_080 Hb_000258_170 Hb_000258_170 Hb_138585_060--Hb_000258_170 Hb_001141_030 Hb_001141_030 Hb_138585_060--Hb_001141_030 Hb_007100_030 Hb_007100_030 Hb_138585_060--Hb_007100_030 Hb_000479_010 Hb_000479_010 Hb_138585_060--Hb_000479_010 Hb_129204_030 Hb_129204_030 Hb_021409_030--Hb_129204_030 Hb_004375_140 Hb_004375_140 Hb_021409_030--Hb_004375_140 Hb_000608_370 Hb_000608_370 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160 Hb_000072_080--Hb_012753_160 Hb_002235_280 Hb_002235_280 Hb_000072_080--Hb_002235_280 Hb_000072_080--Hb_021409_030 Hb_001143_080 Hb_001143_080 Hb_000072_080--Hb_001143_080 Hb_000120_680 Hb_000120_680 Hb_000072_080--Hb_000120_680 Hb_000258_170--Hb_000608_370 Hb_000258_170--Hb_021409_030 Hb_005511_160 Hb_005511_160 Hb_000258_170--Hb_005511_160 Hb_000788_090 Hb_000788_090 Hb_000258_170--Hb_000788_090 Hb_001047_230 Hb_001047_230 Hb_000258_170--Hb_001047_230 Hb_003203_040 Hb_003203_040 Hb_001141_030--Hb_003203_040 Hb_001109_020 Hb_001109_020 Hb_001141_030--Hb_001109_020 Hb_001141_030--Hb_001143_080 Hb_003455_040 Hb_003455_040 Hb_001141_030--Hb_003455_040 Hb_001141_030--Hb_012753_160 Hb_003994_040 Hb_003994_040 Hb_001141_030--Hb_003994_040 Hb_001842_040 Hb_001842_040 Hb_007100_030--Hb_001842_040 Hb_000441_190 Hb_000441_190 Hb_007100_030--Hb_000441_190 Hb_000963_180 Hb_000963_180 Hb_007100_030--Hb_000963_180 Hb_007100_030--Hb_001141_030 Hb_007100_030--Hb_003203_040 Hb_001140_060 Hb_001140_060 Hb_000479_010--Hb_001140_060 Hb_008300_010 Hb_008300_010 Hb_000479_010--Hb_008300_010 Hb_000479_010--Hb_012753_160 Hb_006031_020 Hb_006031_020 Hb_000479_010--Hb_006031_020 Hb_011867_010 Hb_011867_010 Hb_000479_010--Hb_011867_010 Hb_000479_010--Hb_021409_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.0022 7.12126 7.65161 11.4552 11.6073 14.8363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7902 46.1449 33.1874 5.56607 7.19419

CAGE analysis