Hb_138585_090

Information

Type -
Description -
Location Contig138585: 68024-72737
Sequence    

Annotation

kegg
ID vvi:100249169
description long chain base biosynthesis protein 2a
nr
ID XP_007038096.1
description Long chain base2 isoform 2 [Theobroma cacao]
swissprot
ID Q2R3K3
description Long chain base biosynthesis protein 2a OS=Oryza sativa subsp. japonica GN=Os11g0516000 PE=2 SV=1
trembl
ID A0A061G085
description Long chain base2 isoform 2 OS=Theobroma cacao GN=TCM_014726 PE=3 SV=1
Gene Ontology
ID GO:0004758
description long chain base biosynthesis protein 2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10565: 68118-72721
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138585_090 0.0 - - Long chain base2 isoform 2 [Theobroma cacao]
2 Hb_002863_050 0.0771385166 - - aldose 1-epimerase, putative [Ricinus communis]
3 Hb_005496_140 0.0804690928 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000340_180 0.0822920946 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
5 Hb_002013_020 0.0824103852 - - PREDICTED: uncharacterized protein LOC105641613 [Jatropha curcas]
6 Hb_000925_130 0.0840402916 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
7 Hb_004162_130 0.0840880071 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002754_010 0.0843000121 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
9 Hb_033006_030 0.0843425449 - - PREDICTED: F-box/kelch-repeat protein At1g22040-like [Jatropha curcas]
10 Hb_001163_050 0.0866331931 - - PREDICTED: histone deacetylase 9 [Jatropha curcas]
11 Hb_000866_260 0.0866743255 - - PREDICTED: F-box/kelch-repeat protein SKIP4 isoform X1 [Jatropha curcas]
12 Hb_000614_160 0.0870253394 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04130, mitochondrial [Jatropha curcas]
13 Hb_003416_010 0.0879182147 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 13 homolog B [Malus domestica]
14 Hb_000288_030 0.088182987 - - PREDICTED: syntaxin-32 [Jatropha curcas]
15 Hb_002740_030 0.0882989093 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
16 Hb_075449_010 0.0885977087 - - PREDICTED: cysteine synthase 2-like [Jatropha curcas]
17 Hb_011519_010 0.0886016294 - - PREDICTED: uncharacterized protein LOC105645310 [Jatropha curcas]
18 Hb_000465_160 0.0886263514 - - PREDICTED: uncharacterized protein LOC105632297 [Jatropha curcas]
19 Hb_024439_010 0.089673676 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
20 Hb_001247_250 0.0906507026 - - PREDICTED: uncharacterized protein LOC105647377 [Jatropha curcas]

Gene co-expression network

sample Hb_138585_090 Hb_138585_090 Hb_002863_050 Hb_002863_050 Hb_138585_090--Hb_002863_050 Hb_005496_140 Hb_005496_140 Hb_138585_090--Hb_005496_140 Hb_000340_180 Hb_000340_180 Hb_138585_090--Hb_000340_180 Hb_002013_020 Hb_002013_020 Hb_138585_090--Hb_002013_020 Hb_000925_130 Hb_000925_130 Hb_138585_090--Hb_000925_130 Hb_004162_130 Hb_004162_130 Hb_138585_090--Hb_004162_130 Hb_002863_050--Hb_005496_140 Hb_000580_180 Hb_000580_180 Hb_002863_050--Hb_000580_180 Hb_005144_160 Hb_005144_160 Hb_002863_050--Hb_005144_160 Hb_001142_030 Hb_001142_030 Hb_002863_050--Hb_001142_030 Hb_003416_010 Hb_003416_010 Hb_002863_050--Hb_003416_010 Hb_000416_040 Hb_000416_040 Hb_002863_050--Hb_000416_040 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_000375_350 Hb_000375_350 Hb_005496_140--Hb_000375_350 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_017895_040 Hb_017895_040 Hb_005496_140--Hb_017895_040 Hb_005496_140--Hb_003416_010 Hb_003938_090 Hb_003938_090 Hb_000340_180--Hb_003938_090 Hb_000035_180 Hb_000035_180 Hb_000340_180--Hb_000035_180 Hb_001278_100 Hb_001278_100 Hb_000340_180--Hb_001278_100 Hb_000340_180--Hb_005496_140 Hb_000003_230 Hb_000003_230 Hb_000340_180--Hb_000003_230 Hb_004058_030 Hb_004058_030 Hb_000340_180--Hb_004058_030 Hb_004052_080 Hb_004052_080 Hb_002013_020--Hb_004052_080 Hb_003513_010 Hb_003513_010 Hb_002013_020--Hb_003513_010 Hb_001456_060 Hb_001456_060 Hb_002013_020--Hb_001456_060 Hb_001163_050 Hb_001163_050 Hb_002013_020--Hb_001163_050 Hb_032202_140 Hb_032202_140 Hb_002013_020--Hb_032202_140 Hb_002876_230 Hb_002876_230 Hb_002013_020--Hb_002876_230 Hb_000288_030 Hb_000288_030 Hb_000925_130--Hb_000288_030 Hb_013358_040 Hb_013358_040 Hb_000925_130--Hb_013358_040 Hb_000928_070 Hb_000928_070 Hb_000925_130--Hb_000928_070 Hb_000349_260 Hb_000349_260 Hb_000925_130--Hb_000349_260 Hb_000345_310 Hb_000345_310 Hb_000925_130--Hb_000345_310 Hb_000925_130--Hb_000375_350 Hb_004162_130--Hb_000375_350 Hb_164010_040 Hb_164010_040 Hb_004162_130--Hb_164010_040 Hb_001300_150 Hb_001300_150 Hb_004162_130--Hb_001300_150 Hb_003728_060 Hb_003728_060 Hb_004162_130--Hb_003728_060 Hb_000733_200 Hb_000733_200 Hb_004162_130--Hb_000733_200 Hb_011519_010 Hb_011519_010 Hb_004162_130--Hb_011519_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1481 21.7267 28.9838 26.3771 26.2349 23.6491
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5426 40.3804 38.0176 13.8044 23.5675

CAGE analysis