Hb_138606_020

Information

Type -
Description -
Location Contig138606: 7845-8496
Sequence    

Annotation

kegg
ID tcc:TCM_010451
description Nitrate transporter2.5
nr
ID XP_007044725.1
description Nitrate transporter2.5 [Theobroma cacao]
swissprot
ID Q9LPV5
description High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1
trembl
ID A0A061E862
description Nitrate transporter2.5 OS=Theobroma cacao GN=TCM_010451 PE=4 SV=1
Gene Ontology
ID GO:0005886
description high affinity nitrate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138606_020 0.0 - - Nitrate transporter2.5 [Theobroma cacao]
2 Hb_029260_010 0.043313735 - - nitrate transporter, putative [Ricinus communis]
3 Hb_000840_050 0.0731322663 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
4 Hb_009659_040 0.085868984 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
5 Hb_005357_020 0.0885667039 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000347_420 0.1020659752 - - hypothetical protein JCGZ_24696 [Jatropha curcas]
7 Hb_012743_020 0.1022457836 - - serine/threonine protein phosphatase, putative [Ricinus communis]
8 Hb_000917_120 0.1086026708 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007943_020 0.1111959255 - - transcription factor, putative [Ricinus communis]
10 Hb_004122_060 0.1131526938 - - PREDICTED: uncharacterized acetyltransferase At3g50280-like [Jatropha curcas]
11 Hb_007420_020 0.1132735246 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
12 Hb_010417_100 0.1147668698 - - PREDICTED: respiratory burst oxidase homolog protein A [Jatropha curcas]
13 Hb_000589_240 0.1169256323 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_175758_010 0.1177241162 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
15 Hb_001329_110 0.1209079482 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
16 Hb_000597_080 0.1211775429 - - PREDICTED: 7-deoxyloganetic acid glucosyltransferase-like isoform X2 [Jatropha curcas]
17 Hb_006120_030 0.122211138 - - -
18 Hb_000497_100 0.1224125015 - - respiratory burst oxidase D [Manihot esculenta]
19 Hb_000028_460 0.1232580974 - - hypothetical protein POPTR_0015s05340g [Populus trichocarpa]
20 Hb_038777_010 0.1238582029 transcription factor TF Family: G2-like PREDICTED: probable transcription factor KAN2 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_138606_020 Hb_138606_020 Hb_029260_010 Hb_029260_010 Hb_138606_020--Hb_029260_010 Hb_000840_050 Hb_000840_050 Hb_138606_020--Hb_000840_050 Hb_009659_040 Hb_009659_040 Hb_138606_020--Hb_009659_040 Hb_005357_020 Hb_005357_020 Hb_138606_020--Hb_005357_020 Hb_000347_420 Hb_000347_420 Hb_138606_020--Hb_000347_420 Hb_012743_020 Hb_012743_020 Hb_138606_020--Hb_012743_020 Hb_029260_010--Hb_005357_020 Hb_029260_010--Hb_012743_020 Hb_029260_010--Hb_000347_420 Hb_029260_010--Hb_000840_050 Hb_007943_020 Hb_007943_020 Hb_029260_010--Hb_007943_020 Hb_175758_010 Hb_175758_010 Hb_000840_050--Hb_175758_010 Hb_000203_080 Hb_000203_080 Hb_000840_050--Hb_000203_080 Hb_001329_110 Hb_001329_110 Hb_000840_050--Hb_001329_110 Hb_000840_050--Hb_009659_040 Hb_010417_100 Hb_010417_100 Hb_000840_050--Hb_010417_100 Hb_000917_120 Hb_000917_120 Hb_009659_040--Hb_000917_120 Hb_001660_050 Hb_001660_050 Hb_009659_040--Hb_001660_050 Hb_170878_050 Hb_170878_050 Hb_009659_040--Hb_170878_050 Hb_029866_110 Hb_029866_110 Hb_009659_040--Hb_029866_110 Hb_005357_020--Hb_012743_020 Hb_005357_020--Hb_010417_100 Hb_038777_010 Hb_038777_010 Hb_005357_020--Hb_038777_010 Hb_000589_240 Hb_000589_240 Hb_005357_020--Hb_000589_240 Hb_000347_420--Hb_007943_020 Hb_004307_070 Hb_004307_070 Hb_000347_420--Hb_004307_070 Hb_000095_070 Hb_000095_070 Hb_000347_420--Hb_000095_070 Hb_000994_100 Hb_000994_100 Hb_000347_420--Hb_000994_100 Hb_003226_030 Hb_003226_030 Hb_012743_020--Hb_003226_030 Hb_012743_020--Hb_000589_240 Hb_001143_140 Hb_001143_140 Hb_012743_020--Hb_001143_140 Hb_002000_130 Hb_002000_130 Hb_012743_020--Hb_002000_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 5.26078 2.23168 4.96791 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.15222 4.0102

CAGE analysis