Hb_138977_010

Information

Type -
Description -
Location Contig138977: 77-613
Sequence    

Annotation

kegg
ID pmum:103338993
description LRR receptor-like serine/threonine-protein kinase FLS2
nr
ID CBI16545.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q940E8
description Leucine-rich repeat receptor-like protein FASCIATED EAR2 OS=Zea mays GN=FEA2 PE=1 SV=1
trembl
ID D7SLL7
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g00370 PE=4 SV=1
Gene Ontology
ID GO:0003824
description lrr receptor-like serine threonine-protein kinase fls2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_138977_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000172_270 0.0641405528 - - hypothetical protein JCGZ_24087 [Jatropha curcas]
3 Hb_001140_290 0.0649956823 - - hypothetical protein JCGZ_26107 [Jatropha curcas]
4 Hb_002151_070 0.0832620347 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
5 Hb_010589_010 0.087621836 - - PREDICTED: classical arabinogalactan protein 9-like [Jatropha curcas]
6 Hb_002662_070 0.0895036495 - - hypothetical protein JCGZ_16102 [Jatropha curcas]
7 Hb_002809_180 0.0896806877 - - PREDICTED: homeobox protein HD1 [Jatropha curcas]
8 Hb_009620_110 0.0898770235 - - -
9 Hb_001377_220 0.0937768278 - - dopamine beta-monooxygenase, putative [Ricinus communis]
10 Hb_029587_010 0.0938403298 - - G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
11 Hb_010172_040 0.0946770442 - - PREDICTED: BAG family molecular chaperone regulator 3-like isoform X1 [Jatropha curcas]
12 Hb_005000_150 0.0963342327 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007227_030 0.0984752303 - - hypothetical protein JCGZ_24975 [Jatropha curcas]
14 Hb_061700_010 0.0989531472 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Prunus mume]
15 Hb_009522_010 0.0989686967 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
16 Hb_108090_010 0.0991679079 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001514_050 0.1011844158 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
18 Hb_001397_020 0.1031502013 - - cytochrome P450 family protein [Populus trichocarpa]
19 Hb_002835_360 0.1047061935 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
20 Hb_005711_030 0.1054239458 - - hypothetical protein RCOM_0460020 [Ricinus communis]

Gene co-expression network

sample Hb_138977_010 Hb_138977_010 Hb_000172_270 Hb_000172_270 Hb_138977_010--Hb_000172_270 Hb_001140_290 Hb_001140_290 Hb_138977_010--Hb_001140_290 Hb_002151_070 Hb_002151_070 Hb_138977_010--Hb_002151_070 Hb_010589_010 Hb_010589_010 Hb_138977_010--Hb_010589_010 Hb_002662_070 Hb_002662_070 Hb_138977_010--Hb_002662_070 Hb_002809_180 Hb_002809_180 Hb_138977_010--Hb_002809_180 Hb_000421_040 Hb_000421_040 Hb_000172_270--Hb_000421_040 Hb_061700_010 Hb_061700_010 Hb_000172_270--Hb_061700_010 Hb_010172_040 Hb_010172_040 Hb_000172_270--Hb_010172_040 Hb_001289_040 Hb_001289_040 Hb_000172_270--Hb_001289_040 Hb_000172_270--Hb_002809_180 Hb_001140_290--Hb_002151_070 Hb_005000_150 Hb_005000_150 Hb_001140_290--Hb_005000_150 Hb_001140_290--Hb_002809_180 Hb_000103_440 Hb_000103_440 Hb_001140_290--Hb_000103_440 Hb_001140_290--Hb_010589_010 Hb_002151_070--Hb_005000_150 Hb_002151_070--Hb_000103_440 Hb_000813_070 Hb_000813_070 Hb_002151_070--Hb_000813_070 Hb_005711_030 Hb_005711_030 Hb_002151_070--Hb_005711_030 Hb_001289_070 Hb_001289_070 Hb_002151_070--Hb_001289_070 Hb_001397_020 Hb_001397_020 Hb_010589_010--Hb_001397_020 Hb_029587_010 Hb_029587_010 Hb_010589_010--Hb_029587_010 Hb_001433_090 Hb_001433_090 Hb_010589_010--Hb_001433_090 Hb_003549_100 Hb_003549_100 Hb_010589_010--Hb_003549_100 Hb_000002_110 Hb_000002_110 Hb_010589_010--Hb_000002_110 Hb_001500_130 Hb_001500_130 Hb_010589_010--Hb_001500_130 Hb_001377_220 Hb_001377_220 Hb_002662_070--Hb_001377_220 Hb_005686_040 Hb_005686_040 Hb_002662_070--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_002662_070--Hb_001051_060 Hb_001935_060 Hb_001935_060 Hb_002662_070--Hb_001935_060 Hb_000347_060 Hb_000347_060 Hb_002662_070--Hb_000347_060 Hb_002835_360 Hb_002835_360 Hb_002662_070--Hb_002835_360 Hb_002809_180--Hb_010172_040 Hb_002809_180--Hb_001397_020 Hb_002809_180--Hb_003549_100 Hb_002809_180--Hb_010589_010 Hb_003152_020 Hb_003152_020 Hb_002809_180--Hb_003152_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0619847 0.178785 0.863861 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.717453

CAGE analysis