Hb_139138_010

Information

Type -
Description -
Location Contig139138: 994-2375
Sequence    

Annotation

kegg
ID cit:102631139
description uncharacterized LOC102631139
nr
ID XP_012093340.1
description PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A5C6H4
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016615 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139138_010 0.0 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
2 Hb_007951_130 0.14647198 desease resistance Gene Name: UBN2_3 JHL25H03.6 [Jatropha curcas]
3 Hb_005147_010 0.2040736702 - - PREDICTED: uncharacterized protein LOC105629670 [Jatropha curcas]
4 Hb_011909_140 0.2224053669 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
5 Hb_001117_120 0.2427385953 - - chloride channel clc, putative [Ricinus communis]
6 Hb_000483_480 0.2515741064 - - conserved hypothetical protein [Ricinus communis]
7 Hb_128051_010 0.2602250942 - - -
8 Hb_004136_030 0.2733582512 - - -
9 Hb_000152_100 0.2750008418 - - PREDICTED: probable protein phosphatase 2C 75 isoform X2 [Jatropha curcas]
10 Hb_021888_120 0.2751160984 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
11 Hb_100180_010 0.2787868781 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_004567_020 0.2819680125 - - Small ubiquitin-related modifier 2 [Morus notabilis]
13 Hb_002526_020 0.2825428121 - - -
14 Hb_002112_010 0.2835529054 - - hypothetical protein POPTR_0001s45830g [Populus trichocarpa]
15 Hb_061195_020 0.2836628225 - - PREDICTED: uncharacterized protein LOC101990594 [Microtus ochrogaster]
16 Hb_006816_400 0.2843914261 - - PREDICTED: wall-associated receptor kinase-like 20 [Jatropha curcas]
17 Hb_000096_130 0.2874551294 - - hypothetical protein 23 [Hevea brasiliensis]
18 Hb_109268_010 0.2884780857 - - PREDICTED: uncharacterized protein LOC105650977 [Jatropha curcas]
19 Hb_001199_040 0.2892156467 - - unnamed protein product [Coffea canephora]
20 Hb_002759_110 0.2910960732 - - RNA-binding family protein, putative isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_139138_010 Hb_139138_010 Hb_007951_130 Hb_007951_130 Hb_139138_010--Hb_007951_130 Hb_005147_010 Hb_005147_010 Hb_139138_010--Hb_005147_010 Hb_011909_140 Hb_011909_140 Hb_139138_010--Hb_011909_140 Hb_001117_120 Hb_001117_120 Hb_139138_010--Hb_001117_120 Hb_000483_480 Hb_000483_480 Hb_139138_010--Hb_000483_480 Hb_128051_010 Hb_128051_010 Hb_139138_010--Hb_128051_010 Hb_021888_120 Hb_021888_120 Hb_007951_130--Hb_021888_120 Hb_000096_130 Hb_000096_130 Hb_007951_130--Hb_000096_130 Hb_007951_130--Hb_011909_140 Hb_007951_130--Hb_000483_480 Hb_000418_080 Hb_000418_080 Hb_007951_130--Hb_000418_080 Hb_183612_060 Hb_183612_060 Hb_005147_010--Hb_183612_060 Hb_061195_020 Hb_061195_020 Hb_005147_010--Hb_061195_020 Hb_005147_010--Hb_011909_140 Hb_001199_040 Hb_001199_040 Hb_005147_010--Hb_001199_040 Hb_005015_030 Hb_005015_030 Hb_005147_010--Hb_005015_030 Hb_001153_180 Hb_001153_180 Hb_011909_140--Hb_001153_180 Hb_002701_220 Hb_002701_220 Hb_011909_140--Hb_002701_220 Hb_000891_030 Hb_000891_030 Hb_011909_140--Hb_000891_030 Hb_000451_070 Hb_000451_070 Hb_011909_140--Hb_000451_070 Hb_088753_010 Hb_088753_010 Hb_011909_140--Hb_088753_010 Hb_011909_140--Hb_061195_020 Hb_097218_020 Hb_097218_020 Hb_001117_120--Hb_097218_020 Hb_002217_520 Hb_002217_520 Hb_001117_120--Hb_002217_520 Hb_003687_030 Hb_003687_030 Hb_001117_120--Hb_003687_030 Hb_062785_010 Hb_062785_010 Hb_001117_120--Hb_062785_010 Hb_000318_080 Hb_000318_080 Hb_001117_120--Hb_000318_080 Hb_002603_060 Hb_002603_060 Hb_000483_480--Hb_002603_060 Hb_000692_020 Hb_000692_020 Hb_000483_480--Hb_000692_020 Hb_004567_020 Hb_004567_020 Hb_000483_480--Hb_004567_020 Hb_001105_090 Hb_001105_090 Hb_000483_480--Hb_001105_090 Hb_008066_030 Hb_008066_030 Hb_000483_480--Hb_008066_030 Hb_000031_080 Hb_000031_080 Hb_000483_480--Hb_000031_080 Hb_109268_010 Hb_109268_010 Hb_128051_010--Hb_109268_010 Hb_001022_060 Hb_001022_060 Hb_128051_010--Hb_001022_060 Hb_003209_050 Hb_003209_050 Hb_128051_010--Hb_003209_050 Hb_000077_240 Hb_000077_240 Hb_128051_010--Hb_000077_240 Hb_003398_030 Hb_003398_030 Hb_128051_010--Hb_003398_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.139844 4.66465 1.32828 0.542845 0 0.231833
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.32574 7.89868 0.758009 1.46007 1.46275

CAGE analysis