Hb_139294_010

Information

Type -
Description -
Location Contig139294: 675-2068
Sequence    

Annotation

kegg
ID rcu:RCOM_0609410
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002521979.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FRS4
description Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
trembl
ID B9S7L0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0609410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139294_010 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_005162_090 0.0688127176 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
3 Hb_012022_040 0.085464152 - - Protein SIS1, putative [Ricinus communis]
4 Hb_005784_040 0.0854923129 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
5 Hb_000347_250 0.0903590923 - - PREDICTED: uncharacterized protein LOC105133971 [Populus euphratica]
6 Hb_000221_190 0.0928921156 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
7 Hb_017987_050 0.0930831628 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
8 Hb_000869_080 0.0938868813 - - PREDICTED: uncharacterized protein LOC105641084 isoform X2 [Jatropha curcas]
9 Hb_000729_030 0.0958814453 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
10 Hb_001278_100 0.0967590331 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
11 Hb_000856_010 0.0981398291 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
12 Hb_000738_020 0.0989629281 - - zinc finger protein, putative [Ricinus communis]
13 Hb_000522_150 0.09913382 - - PREDICTED: uncharacterized protein LOC105646670 [Jatropha curcas]
14 Hb_000161_130 0.0993885956 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
15 Hb_095296_010 0.1008984334 - - PREDICTED: syntaxin-32 [Jatropha curcas]
16 Hb_062226_130 0.1014679974 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4 [Jatropha curcas]
17 Hb_004607_090 0.1027215511 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
18 Hb_000705_170 0.1028275867 - - PREDICTED: pentatricopeptide repeat-containing protein At3g46870 [Jatropha curcas]
19 Hb_000116_450 0.1029430045 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 1 [Jatropha curcas]
20 Hb_000261_020 0.1033930076 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_139294_010 Hb_139294_010 Hb_005162_090 Hb_005162_090 Hb_139294_010--Hb_005162_090 Hb_012022_040 Hb_012022_040 Hb_139294_010--Hb_012022_040 Hb_005784_040 Hb_005784_040 Hb_139294_010--Hb_005784_040 Hb_000347_250 Hb_000347_250 Hb_139294_010--Hb_000347_250 Hb_000221_190 Hb_000221_190 Hb_139294_010--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_139294_010--Hb_017987_050 Hb_062226_130 Hb_062226_130 Hb_005162_090--Hb_062226_130 Hb_000738_020 Hb_000738_020 Hb_005162_090--Hb_000738_020 Hb_000869_080 Hb_000869_080 Hb_005162_090--Hb_000869_080 Hb_005162_090--Hb_012022_040 Hb_005162_090--Hb_000221_190 Hb_000856_010 Hb_000856_010 Hb_012022_040--Hb_000856_010 Hb_001278_100 Hb_001278_100 Hb_012022_040--Hb_001278_100 Hb_004109_220 Hb_004109_220 Hb_012022_040--Hb_004109_220 Hb_149985_010 Hb_149985_010 Hb_012022_040--Hb_149985_010 Hb_012022_040--Hb_000221_190 Hb_000928_070 Hb_000928_070 Hb_012022_040--Hb_000928_070 Hb_002631_280 Hb_002631_280 Hb_005784_040--Hb_002631_280 Hb_000116_450 Hb_000116_450 Hb_005784_040--Hb_000116_450 Hb_000003_540 Hb_000003_540 Hb_005784_040--Hb_000003_540 Hb_001357_150 Hb_001357_150 Hb_005784_040--Hb_001357_150 Hb_005784_040--Hb_001278_100 Hb_000292_100 Hb_000292_100 Hb_000347_250--Hb_000292_100 Hb_007472_070 Hb_007472_070 Hb_000347_250--Hb_007472_070 Hb_000347_250--Hb_062226_130 Hb_000347_250--Hb_012022_040 Hb_002849_130 Hb_002849_130 Hb_000347_250--Hb_002849_130 Hb_001259_050 Hb_001259_050 Hb_000347_250--Hb_001259_050 Hb_003582_060 Hb_003582_060 Hb_000221_190--Hb_003582_060 Hb_000310_020 Hb_000310_020 Hb_000221_190--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000221_190--Hb_000505_130 Hb_006615_240 Hb_006615_240 Hb_000221_190--Hb_006615_240 Hb_000221_190--Hb_001278_100 Hb_000161_130 Hb_000161_130 Hb_017987_050--Hb_000161_130 Hb_000099_150 Hb_000099_150 Hb_017987_050--Hb_000099_150 Hb_000327_230 Hb_000327_230 Hb_017987_050--Hb_000327_230 Hb_004324_090 Hb_004324_090 Hb_017987_050--Hb_004324_090 Hb_017987_050--Hb_000310_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.0803 10.9348 7.45847 12.2218 6.37998 5.06486
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.48715 15.3382 7.19952 4.2931 8.53689

CAGE analysis