Hb_139294_020

Information

Type -
Description -
Location Contig139294: 10945-15332
Sequence    

Annotation

kegg
ID cmo:103495589
description uncharacterized LOC103495589
nr
ID AIU36098.1
description vat protein [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A097NYY2
description Vat protein OS=Cucumis melo PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10720: 10966-11526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139294_020 0.0 - - vat protein [Cucumis melo]
2 Hb_126861_010 0.1022439587 - - hypothetical protein M569_05914, partial [Genlisea aurea]
3 Hb_021596_090 0.1027572581 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8-B [Jatropha curcas]
4 Hb_008686_080 0.103968204 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
5 Hb_002995_020 0.1063679325 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
6 Hb_000805_120 0.1079791377 - - ubiquitin fusion degradaton protein, putative [Ricinus communis]
7 Hb_007044_120 0.1111710251 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
8 Hb_000934_250 0.1126032364 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
9 Hb_007875_030 0.1129554113 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
10 Hb_065525_020 0.1131862928 - - PREDICTED: geranylgeranyl transferase type-1 subunit beta [Jatropha curcas]
11 Hb_000020_060 0.113702235 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
12 Hb_005773_060 0.1139731581 - - defender against cell death, putative [Ricinus communis]
13 Hb_001427_110 0.114891331 - - PREDICTED: LOW QUALITY PROTEIN: yrdC domain-containing protein, mitochondrial [Jatropha curcas]
14 Hb_021068_040 0.1151088686 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
15 Hb_000684_270 0.1151890731 - - PREDICTED: probable DNA helicase MCM8 isoform X1 [Jatropha curcas]
16 Hb_172426_040 0.116406987 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
17 Hb_002234_070 0.116762559 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
18 Hb_003544_020 0.1174469439 - - PREDICTED: elongin-A [Jatropha curcas]
19 Hb_000462_130 0.117684388 - - hypothetical protein CICLE_v10009355mg [Citrus clementina]
20 Hb_030736_080 0.1179750955 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_139294_020 Hb_139294_020 Hb_126861_010 Hb_126861_010 Hb_139294_020--Hb_126861_010 Hb_021596_090 Hb_021596_090 Hb_139294_020--Hb_021596_090 Hb_008686_080 Hb_008686_080 Hb_139294_020--Hb_008686_080 Hb_002995_020 Hb_002995_020 Hb_139294_020--Hb_002995_020 Hb_000805_120 Hb_000805_120 Hb_139294_020--Hb_000805_120 Hb_007044_120 Hb_007044_120 Hb_139294_020--Hb_007044_120 Hb_003185_110 Hb_003185_110 Hb_126861_010--Hb_003185_110 Hb_153544_010 Hb_153544_010 Hb_126861_010--Hb_153544_010 Hb_004800_060 Hb_004800_060 Hb_126861_010--Hb_004800_060 Hb_001141_140 Hb_001141_140 Hb_126861_010--Hb_001141_140 Hb_003018_020 Hb_003018_020 Hb_126861_010--Hb_003018_020 Hb_000046_100 Hb_000046_100 Hb_021596_090--Hb_000046_100 Hb_021596_090--Hb_007044_120 Hb_143766_010 Hb_143766_010 Hb_021596_090--Hb_143766_010 Hb_000103_320 Hb_000103_320 Hb_021596_090--Hb_000103_320 Hb_000638_250 Hb_000638_250 Hb_021596_090--Hb_000638_250 Hb_034299_050 Hb_034299_050 Hb_021596_090--Hb_034299_050 Hb_007477_070 Hb_007477_070 Hb_008686_080--Hb_007477_070 Hb_001328_040 Hb_001328_040 Hb_008686_080--Hb_001328_040 Hb_001662_070 Hb_001662_070 Hb_008686_080--Hb_001662_070 Hb_003544_020 Hb_003544_020 Hb_008686_080--Hb_003544_020 Hb_008686_080--Hb_000805_120 Hb_001221_320 Hb_001221_320 Hb_008686_080--Hb_001221_320 Hb_004116_190 Hb_004116_190 Hb_002995_020--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_002995_020--Hb_000020_060 Hb_003787_010 Hb_003787_010 Hb_002995_020--Hb_003787_010 Hb_001633_050 Hb_001633_050 Hb_002995_020--Hb_001633_050 Hb_000656_240 Hb_000656_240 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_145880_030 Hb_145880_030 Hb_000805_120--Hb_145880_030 Hb_002045_040 Hb_002045_040 Hb_000805_120--Hb_002045_040 Hb_000805_120--Hb_001662_070 Hb_023226_040 Hb_023226_040 Hb_000805_120--Hb_023226_040 Hb_000251_070 Hb_000251_070 Hb_000805_120--Hb_000251_070 Hb_007044_120--Hb_000638_250 Hb_000403_060 Hb_000403_060 Hb_007044_120--Hb_000403_060 Hb_148121_040 Hb_148121_040 Hb_007044_120--Hb_148121_040 Hb_000175_340 Hb_000175_340 Hb_007044_120--Hb_000175_340 Hb_000120_960 Hb_000120_960 Hb_007044_120--Hb_000120_960
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.59776 2.09131 4.40638 3.56395 2.90574 2.48135
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.29068 6.71842 4.43013 3.41882 0.702586

CAGE analysis