Hb_139518_030

Information

Type -
Description -
Location Contig139518: 24278-27908
Sequence    

Annotation

kegg
ID rcu:RCOM_0377340
description protein kinase atn1, putative (EC:2.7.10.2)
nr
ID XP_002532865.1
description protein kinase atn1, putative [Ricinus communis]
swissprot
ID Q2MHE4
description Serine/threonine-protein kinase HT1 OS=Arabidopsis thaliana GN=HT1 PE=1 SV=1
trembl
ID B9T3P6
description Protein kinase atn1, putative OS=Ricinus communis GN=RCOM_0377340 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase ht1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10731: 24459-28089
cDNA
(Sanger)
(ID:Location)		 028_B11.ab1: 27666-28088

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139518_030 0.0 - - protein kinase atn1, putative [Ricinus communis]
2 Hb_003607_050 0.0877817719 - - PREDICTED: uncharacterized protein LOC105644428 [Jatropha curcas]
3 Hb_003125_190 0.0883544298 - - hypothetical protein POPTR_0015s10960g [Populus trichocarpa]
4 Hb_001504_110 0.0898706864 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
5 Hb_001105_030 0.0929277053 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
6 Hb_001195_280 0.0946426438 - - PREDICTED: uncharacterized protein LOC103928873 isoform X1 [Pyrus x bretschneideri]
7 Hb_153112_020 0.095392288 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
8 Hb_000887_020 0.0954961511 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
9 Hb_007416_030 0.0957399362 - - PREDICTED: transcription initiation factor TFIID subunit 10 [Jatropha curcas]
10 Hb_004735_040 0.0959108634 - - PREDICTED: GTP-binding nuclear protein Ran1A-like [Jatropha curcas]
11 Hb_004635_100 0.0964102534 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase isoform X1 [Jatropha curcas]
12 Hb_012725_050 0.0978674539 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
13 Hb_000201_120 0.0980862149 - - ubiquitin-protein ligase 2a [Hevea brasiliensis]
14 Hb_001821_010 0.0994750256 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
15 Hb_003683_110 0.0996210752 - - JHL10I11.3 [Jatropha curcas]
16 Hb_000331_080 0.1004088113 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
17 Hb_000334_210 0.1008341602 - - PREDICTED: uncharacterized protein LOC105628719 isoform X1 [Jatropha curcas]
18 Hb_000656_240 0.1013143584 - - proteasome subunit alpha type, putative [Ricinus communis]
19 Hb_001235_190 0.1014232114 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
20 Hb_004934_110 0.1024728755 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]

Gene co-expression network

sample Hb_139518_030 Hb_139518_030 Hb_003607_050 Hb_003607_050 Hb_139518_030--Hb_003607_050 Hb_003125_190 Hb_003125_190 Hb_139518_030--Hb_003125_190 Hb_001504_110 Hb_001504_110 Hb_139518_030--Hb_001504_110 Hb_001105_030 Hb_001105_030 Hb_139518_030--Hb_001105_030 Hb_001195_280 Hb_001195_280 Hb_139518_030--Hb_001195_280 Hb_153112_020 Hb_153112_020 Hb_139518_030--Hb_153112_020 Hb_003607_050--Hb_003125_190 Hb_004934_110 Hb_004934_110 Hb_003607_050--Hb_004934_110 Hb_010106_010 Hb_010106_010 Hb_003607_050--Hb_010106_010 Hb_000887_020 Hb_000887_020 Hb_003607_050--Hb_000887_020 Hb_003749_010 Hb_003749_010 Hb_003607_050--Hb_003749_010 Hb_003683_110 Hb_003683_110 Hb_003125_190--Hb_003683_110 Hb_003125_190--Hb_000887_020 Hb_003125_190--Hb_010106_010 Hb_000996_140 Hb_000996_140 Hb_003125_190--Hb_000996_140 Hb_000656_240 Hb_000656_240 Hb_001504_110--Hb_000656_240 Hb_000025_620 Hb_000025_620 Hb_001504_110--Hb_000025_620 Hb_004116_190 Hb_004116_190 Hb_001504_110--Hb_004116_190 Hb_000020_060 Hb_000020_060 Hb_001504_110--Hb_000020_060 Hb_000127_180 Hb_000127_180 Hb_001504_110--Hb_000127_180 Hb_000920_110 Hb_000920_110 Hb_001504_110--Hb_000920_110 Hb_000059_370 Hb_000059_370 Hb_001105_030--Hb_000059_370 Hb_001821_010 Hb_001821_010 Hb_001105_030--Hb_001821_010 Hb_012725_050 Hb_012725_050 Hb_001105_030--Hb_012725_050 Hb_001157_020 Hb_001157_020 Hb_001105_030--Hb_001157_020 Hb_000580_090 Hb_000580_090 Hb_001105_030--Hb_000580_090 Hb_000815_320 Hb_000815_320 Hb_001105_030--Hb_000815_320 Hb_004735_040 Hb_004735_040 Hb_001195_280--Hb_004735_040 Hb_001195_280--Hb_001105_030 Hb_001195_280--Hb_001157_020 Hb_002609_020 Hb_002609_020 Hb_001195_280--Hb_002609_020 Hb_001195_280--Hb_000059_370 Hb_001195_280--Hb_012725_050 Hb_000331_080 Hb_000331_080 Hb_153112_020--Hb_000331_080 Hb_000840_030 Hb_000840_030 Hb_153112_020--Hb_000840_030 Hb_004994_100 Hb_004994_100 Hb_153112_020--Hb_004994_100 Hb_011224_110 Hb_011224_110 Hb_153112_020--Hb_011224_110 Hb_003207_190 Hb_003207_190 Hb_153112_020--Hb_003207_190 Hb_009838_080 Hb_009838_080 Hb_153112_020--Hb_009838_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.5785 11.0202 17.399 7.53755 15.0436 18.6747
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.0199 34.6778 21.2374 7.70899 11.0781

CAGE analysis