Hb_139569_010

Information

Type -
Description -
Location Contig139569: 200-445
Sequence    

Annotation

kegg
ID tcc:TCM_016756
description Senescence-associated gene 21, putative
nr
ID KDP40636.1
description hypothetical protein JCGZ_24635 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KWP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24635 PE=4 SV=1
Gene Ontology
ID GO:0006950
description senescence-associated gene

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139569_010 0.0 - - hypothetical protein JCGZ_24635 [Jatropha curcas]
2 Hb_004453_190 0.2046658558 - - -
3 Hb_001369_290 0.2128173131 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_026186_010 0.2391066079 - - hypothetical protein JCGZ_06344 [Jatropha curcas]
5 Hb_000216_010 0.2459049262 - - carbon monoxide dehydrogenase [Streptomyces sp. CNQ-509]
6 Hb_088117_010 0.2576941643 - - receptor protein kinase, putative [Ricinus communis]
7 Hb_001016_020 0.2587304601 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000866_200 0.2618809984 - - -
9 Hb_185754_010 0.2667798432 - - receptor protein kinase, putative [Ricinus communis]
10 Hb_000172_630 0.293866375 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
11 Hb_125884_010 0.295695525 - - PREDICTED: metalloendoproteinase 1-like [Jatropha curcas]
12 Hb_143629_030 0.3004397754 - - hypothetical protein JCGZ_23143 [Jatropha curcas]
13 Hb_003023_080 0.3061238117 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
14 Hb_002571_040 0.3067036228 - - hypothetical protein RCOM_1321060 [Ricinus communis]
15 Hb_011416_020 0.3070973654 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001787_070 0.307388755 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Camelina sativa]
17 Hb_133661_010 0.3141707221 - - hypothetical protein JCGZ_11734 [Jatropha curcas]
18 Hb_001404_010 0.3153069425 - - hypothetical protein JCGZ_22818 [Jatropha curcas]
19 Hb_009252_120 0.3163832452 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009620_010 0.3174247555 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_139569_010 Hb_139569_010 Hb_004453_190 Hb_004453_190 Hb_139569_010--Hb_004453_190 Hb_001369_290 Hb_001369_290 Hb_139569_010--Hb_001369_290 Hb_026186_010 Hb_026186_010 Hb_139569_010--Hb_026186_010 Hb_000216_010 Hb_000216_010 Hb_139569_010--Hb_000216_010 Hb_088117_010 Hb_088117_010 Hb_139569_010--Hb_088117_010 Hb_001016_020 Hb_001016_020 Hb_139569_010--Hb_001016_020 Hb_129105_010 Hb_129105_010 Hb_004453_190--Hb_129105_010 Hb_004453_190--Hb_001016_020 Hb_021596_060 Hb_021596_060 Hb_004453_190--Hb_021596_060 Hb_004453_190--Hb_026186_010 Hb_133661_010 Hb_133661_010 Hb_004453_190--Hb_133661_010 Hb_001369_290--Hb_026186_010 Hb_000172_630 Hb_000172_630 Hb_001369_290--Hb_000172_630 Hb_001369_290--Hb_088117_010 Hb_185754_010 Hb_185754_010 Hb_001369_290--Hb_185754_010 Hb_005694_030 Hb_005694_030 Hb_001369_290--Hb_005694_030 Hb_026186_010--Hb_000172_630 Hb_026186_010--Hb_088117_010 Hb_026186_010--Hb_185754_010 Hb_006503_010 Hb_006503_010 Hb_000216_010--Hb_006503_010 Hb_143629_030 Hb_143629_030 Hb_000216_010--Hb_143629_030 Hb_009775_040 Hb_009775_040 Hb_000216_010--Hb_009775_040 Hb_002571_040 Hb_002571_040 Hb_000216_010--Hb_002571_040 Hb_001470_070 Hb_001470_070 Hb_000216_010--Hb_001470_070 Hb_088117_010--Hb_185754_010 Hb_009252_120 Hb_009252_120 Hb_088117_010--Hb_009252_120 Hb_088117_010--Hb_000172_630 Hb_006816_160 Hb_006816_160 Hb_088117_010--Hb_006816_160 Hb_008725_190 Hb_008725_190 Hb_088117_010--Hb_008725_190 Hb_005170_020 Hb_005170_020 Hb_001016_020--Hb_005170_020 Hb_000111_200 Hb_000111_200 Hb_001016_020--Hb_000111_200 Hb_023768_020 Hb_023768_020 Hb_001016_020--Hb_023768_020 Hb_108670_010 Hb_108670_010 Hb_001016_020--Hb_108670_010 Hb_001404_030 Hb_001404_030 Hb_001016_020--Hb_001404_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.35139 0.561036 4.45364 0.619121 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 3.6663 0 0.246016 0

CAGE analysis