Hb_139605_010

Information

Type -
Description -
Location Contig139605: 1039-2169
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID AHC13197.1
description polyprotein [Citrus endogenous pararetrovirus]
swissprot
ID -
description -
trembl
ID V9QEC8
description Polyprotein OS=Citrus endogenous pararetrovirus PE=4 SV=1
Gene Ontology
ID GO:0003824
description polyprotein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139605_010 0.0 - - polyprotein [Citrus endogenous pararetrovirus]
2 Hb_027917_010 0.1241604908 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
3 Hb_002576_010 0.1517122565 - - -
4 Hb_054127_020 0.1548063959 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
5 Hb_047923_030 0.1627597752 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
6 Hb_000923_110 0.1701966133 - - PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
7 Hb_006356_030 0.1706142699 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
8 Hb_134377_070 0.174965302 - - -
9 Hb_000142_090 0.1792510197 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
10 Hb_000405_010 0.1812514777 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
11 Hb_181013_010 0.181841615 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
12 Hb_005432_020 0.1851761212 - - -
13 Hb_056506_080 0.186851989 - - PREDICTED: uncharacterized protein LOC104888944 [Beta vulgaris subsp. vulgaris]
14 Hb_009355_010 0.1871513954 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Nelumbo nucifera]
15 Hb_101034_010 0.188438467 - - -
16 Hb_004445_030 0.19001642 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000803_230 0.1913988844 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
18 Hb_006120_160 0.1924040366 - - -
19 Hb_159124_010 0.1938771784 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
20 Hb_159404_010 0.2015800038 - - PREDICTED: probable receptor-like protein kinase At1g67000 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_139605_010 Hb_139605_010 Hb_027917_010 Hb_027917_010 Hb_139605_010--Hb_027917_010 Hb_002576_010 Hb_002576_010 Hb_139605_010--Hb_002576_010 Hb_054127_020 Hb_054127_020 Hb_139605_010--Hb_054127_020 Hb_047923_030 Hb_047923_030 Hb_139605_010--Hb_047923_030 Hb_000923_110 Hb_000923_110 Hb_139605_010--Hb_000923_110 Hb_006356_030 Hb_006356_030 Hb_139605_010--Hb_006356_030 Hb_009355_010 Hb_009355_010 Hb_027917_010--Hb_009355_010 Hb_000405_010 Hb_000405_010 Hb_027917_010--Hb_000405_010 Hb_032733_030 Hb_032733_030 Hb_027917_010--Hb_032733_030 Hb_011931_090 Hb_011931_090 Hb_027917_010--Hb_011931_090 Hb_027917_010--Hb_054127_020 Hb_002576_010--Hb_047923_030 Hb_134377_070 Hb_134377_070 Hb_002576_010--Hb_134377_070 Hb_000142_090 Hb_000142_090 Hb_002576_010--Hb_000142_090 Hb_181013_010 Hb_181013_010 Hb_002576_010--Hb_181013_010 Hb_005432_020 Hb_005432_020 Hb_002576_010--Hb_005432_020 Hb_159124_010 Hb_159124_010 Hb_002576_010--Hb_159124_010 Hb_054127_020--Hb_006356_030 Hb_054127_020--Hb_000405_010 Hb_054127_020--Hb_000923_110 Hb_004445_030 Hb_004445_030 Hb_054127_020--Hb_004445_030 Hb_054127_020--Hb_002576_010 Hb_054127_020--Hb_047923_030 Hb_047923_030--Hb_134377_070 Hb_047923_030--Hb_000142_090 Hb_047923_030--Hb_181013_010 Hb_047923_030--Hb_159124_010 Hb_047923_030--Hb_005432_020 Hb_000923_110--Hb_006356_030 Hb_010367_010 Hb_010367_010 Hb_000923_110--Hb_010367_010 Hb_003868_010 Hb_003868_010 Hb_000923_110--Hb_003868_010 Hb_000466_180 Hb_000466_180 Hb_000923_110--Hb_000466_180 Hb_007167_100 Hb_007167_100 Hb_000923_110--Hb_007167_100 Hb_006356_030--Hb_010367_010 Hb_006356_030--Hb_003868_010 Hb_000025_460 Hb_000025_460 Hb_006356_030--Hb_000025_460 Hb_120076_010 Hb_120076_010 Hb_006356_030--Hb_120076_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0400707 0 0 0.0200702 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0722566 0.444402

CAGE analysis