Hb_140024_010

Information

Type -
Description -
Location Contig140024: 1012-1442
Sequence    

Annotation

kegg
ID vvi:100257097
description uncharacterized protein C167.05
nr
ID XP_002281607.1
description PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7SK62
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g05730 PE=4 SV=1
Gene Ontology
ID GO:0016787
description universal stress protein a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140024_010 0.0 - - PREDICTED: uncharacterized protein C167.05 [Vitis vinifera]
2 Hb_016120_030 0.0993190338 - - hypothetical protein EUGRSUZ_D00080 [Eucalyptus grandis]
3 Hb_000959_200 0.1158308645 - - PREDICTED: uncharacterized protein LOC105636578 [Jatropha curcas]
4 Hb_002999_010 0.123520703 - - PREDICTED: extracellular ribonuclease LE-like [Vitis vinifera]
5 Hb_004031_060 0.1263815086 - - hypothetical protein B456_007G3219002, partial [Gossypium raimondii]
6 Hb_000237_010 0.1362263835 transcription factor TF Family: SRS conserved hypothetical protein [Ricinus communis]
7 Hb_000959_150 0.1488973995 - - PREDICTED: uncharacterized protein LOC104879927 [Vitis vinifera]
8 Hb_005245_030 0.1549452021 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At3g07570 [Jatropha curcas]
9 Hb_000480_050 0.1603827249 - - hypothetical protein PHAVU_004G154200g [Phaseolus vulgaris]
10 Hb_007477_020 0.1632060701 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
11 Hb_010050_010 0.1651382461 - - -
12 Hb_004926_010 0.169831344 - - hypothetical protein JCGZ_27059 [Jatropha curcas]
13 Hb_019053_050 0.172061298 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_003494_100 0.1721452655 transcription factor TF Family: zf-HD Mini zinc finger 2 isoform 1 [Theobroma cacao]
15 Hb_005373_030 0.1732431427 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002368_120 0.175832845 - - hypothetical protein VITISV_033181 [Vitis vinifera]
17 Hb_001091_010 0.1778318454 - - PREDICTED: putative disease resistance protein RGA4 isoform X2 [Malus domestica]
18 Hb_000563_620 0.1838568148 - - hypothetical protein JCGZ_18889 [Jatropha curcas]
19 Hb_012090_010 0.1839423986 - - hypothetical protein RCOM_0904330 [Ricinus communis]
20 Hb_000313_240 0.1839460612 - - hypothetical protein RCOM_0377590 [Ricinus communis]

Gene co-expression network

sample Hb_140024_010 Hb_140024_010 Hb_016120_030 Hb_016120_030 Hb_140024_010--Hb_016120_030 Hb_000959_200 Hb_000959_200 Hb_140024_010--Hb_000959_200 Hb_002999_010 Hb_002999_010 Hb_140024_010--Hb_002999_010 Hb_004031_060 Hb_004031_060 Hb_140024_010--Hb_004031_060 Hb_000237_010 Hb_000237_010 Hb_140024_010--Hb_000237_010 Hb_000959_150 Hb_000959_150 Hb_140024_010--Hb_000959_150 Hb_016120_030--Hb_004031_060 Hb_016120_030--Hb_002999_010 Hb_019053_050 Hb_019053_050 Hb_016120_030--Hb_019053_050 Hb_005245_030 Hb_005245_030 Hb_016120_030--Hb_005245_030 Hb_004926_010 Hb_004926_010 Hb_016120_030--Hb_004926_010 Hb_001141_260 Hb_001141_260 Hb_000959_200--Hb_001141_260 Hb_000959_200--Hb_016120_030 Hb_000959_200--Hb_004031_060 Hb_000959_200--Hb_005245_030 Hb_000959_200--Hb_019053_050 Hb_005373_030 Hb_005373_030 Hb_002999_010--Hb_005373_030 Hb_000480_050 Hb_000480_050 Hb_002999_010--Hb_000480_050 Hb_002999_010--Hb_004926_010 Hb_007477_020 Hb_007477_020 Hb_002999_010--Hb_007477_020 Hb_002999_010--Hb_004031_060 Hb_004031_060--Hb_004926_010 Hb_004031_060--Hb_019053_050 Hb_004031_060--Hb_000480_050 Hb_001091_040 Hb_001091_040 Hb_004031_060--Hb_001091_040 Hb_010050_010 Hb_010050_010 Hb_000237_010--Hb_010050_010 Hb_000237_010--Hb_007477_020 Hb_003494_100 Hb_003494_100 Hb_000237_010--Hb_003494_100 Hb_002368_120 Hb_002368_120 Hb_000237_010--Hb_002368_120 Hb_106677_010 Hb_106677_010 Hb_000237_010--Hb_106677_010 Hb_014096_010 Hb_014096_010 Hb_000959_150--Hb_014096_010 Hb_000959_150--Hb_010050_010 Hb_000563_620 Hb_000563_620 Hb_000959_150--Hb_000563_620 Hb_004241_050 Hb_004241_050 Hb_000959_150--Hb_004241_050 Hb_008536_030 Hb_008536_030 Hb_000959_150--Hb_008536_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.6765 0 286.631 0 2.18408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09683 1.30237 0 32.9218 7.33585

CAGE analysis