Hb_140049_030

Information

Type -
Description -
Location Contig140049: 11048-12826
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09550g
description POPTRDRAFT_231139; hypothetical protein
nr
ID NP_001294896.1
description non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
swissprot
ID Q9LZH5
description Non-specific lipid transfer protein GPI-anchored 2 OS=Arabidopsis thaliana GN=LTPG2 PE=2 SV=1
trembl
ID A0A067L6V1
description Non-specific lipid transfer protein A OS=Jatropha curcas GN=JCGZ_02198 PE=2 SV=1
Gene Ontology
ID GO:0008289
description non-specific lipid-transfer protein at2g13820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10896: 12606-12907 , PASA_asmbl_10898: 13668-16475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140049_030 0.0 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
2 Hb_002045_150 0.0637727504 - - histone acetyltransferase gcn5, putative [Ricinus communis]
3 Hb_000771_180 0.0651733729 - - polypyrimidine tract binding protein, putative [Ricinus communis]
4 Hb_000300_360 0.0687810368 - - PREDICTED: exosome component 10 [Jatropha curcas]
5 Hb_050847_020 0.0710432847 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
6 Hb_140049_020 0.0740591784 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
7 Hb_001545_200 0.0741410951 - - PREDICTED: uncharacterized oxidoreductase At4g09670 [Jatropha curcas]
8 Hb_005539_190 0.0741554263 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
9 Hb_000487_420 0.0759815249 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At1g04390 [Jatropha curcas]
10 Hb_008554_120 0.077203757 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
11 Hb_001799_050 0.0815360482 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
12 Hb_000032_010 0.0856351383 - - crooked neck protein, putative [Ricinus communis]
13 Hb_002918_060 0.0859249204 - - PREDICTED: glyoxysomal processing protease, glyoxysomal isoform X1 [Jatropha curcas]
14 Hb_002783_310 0.086953638 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
15 Hb_001953_150 0.0873358964 - - PREDICTED: protein DEK isoform X2 [Jatropha curcas]
16 Hb_075745_020 0.088867827 - - PREDICTED: uncharacterized protein LOC105649606 isoform X1 [Jatropha curcas]
17 Hb_032202_110 0.08956399 - - PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
18 Hb_000406_240 0.0905346575 - - PREDICTED: double-stranded RNA-binding protein 2-like [Jatropha curcas]
19 Hb_019153_020 0.0916163863 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
20 Hb_003540_160 0.0916180685 - - hypothetical protein POPTR_0011s12160g [Populus trichocarpa]

Gene co-expression network

sample Hb_140049_030 Hb_140049_030 Hb_002045_150 Hb_002045_150 Hb_140049_030--Hb_002045_150 Hb_000771_180 Hb_000771_180 Hb_140049_030--Hb_000771_180 Hb_000300_360 Hb_000300_360 Hb_140049_030--Hb_000300_360 Hb_050847_020 Hb_050847_020 Hb_140049_030--Hb_050847_020 Hb_140049_020 Hb_140049_020 Hb_140049_030--Hb_140049_020 Hb_001545_200 Hb_001545_200 Hb_140049_030--Hb_001545_200 Hb_002157_260 Hb_002157_260 Hb_002045_150--Hb_002157_260 Hb_002045_150--Hb_050847_020 Hb_002045_150--Hb_000771_180 Hb_002045_150--Hb_000300_360 Hb_006452_160 Hb_006452_160 Hb_002045_150--Hb_006452_160 Hb_002783_310 Hb_002783_310 Hb_000771_180--Hb_002783_310 Hb_000771_180--Hb_050847_020 Hb_000160_350 Hb_000160_350 Hb_000771_180--Hb_000160_350 Hb_000334_270 Hb_000334_270 Hb_000771_180--Hb_000334_270 Hb_000664_070 Hb_000664_070 Hb_000771_180--Hb_000664_070 Hb_007982_070 Hb_007982_070 Hb_000300_360--Hb_007982_070 Hb_001633_040 Hb_001633_040 Hb_000300_360--Hb_001633_040 Hb_000796_190 Hb_000796_190 Hb_000300_360--Hb_000796_190 Hb_000300_360--Hb_140049_020 Hb_080147_040 Hb_080147_040 Hb_000300_360--Hb_080147_040 Hb_007558_120 Hb_007558_120 Hb_000300_360--Hb_007558_120 Hb_050847_020--Hb_002783_310 Hb_011386_040 Hb_011386_040 Hb_050847_020--Hb_011386_040 Hb_000136_090 Hb_000136_090 Hb_050847_020--Hb_000136_090 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_019153_020 Hb_019153_020 Hb_140049_020--Hb_019153_020 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_001828_160 Hb_001828_160 Hb_001545_200--Hb_001828_160 Hb_021422_010 Hb_021422_010 Hb_001545_200--Hb_021422_010 Hb_001545_200--Hb_002157_260 Hb_005332_020 Hb_005332_020 Hb_001545_200--Hb_005332_020 Hb_001307_080 Hb_001307_080 Hb_001545_200--Hb_001307_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.7932 13.5798 9.367 3.6937 17.274 12.5505
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3592 7.11046 5.30764 10.8779 5.55657

CAGE analysis