Hb_140049_080

Information

Type -
Description -
Location Contig140049: 34135-38072
Sequence    

Annotation

kegg
ID rcu:RCOM_0911670
description ATP-dependent helicase NAM7, putative
nr
ID XP_012069673.1
description PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
swissprot
ID Q8GYD9
description Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
trembl
ID A0A067L6W7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02203 PE=4 SV=1
Gene Ontology
ID GO:0003724
description probable rna helicase sde3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10908: 34165-37890
cDNA
(Sanger)
(ID:Location)		 005_P09.ab1: 34286-35167

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140049_080 0.0 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
2 Hb_061878_010 0.0455170054 - - hypothetical protein CISIN_1g0094072mg, partial [Citrus sinensis]
3 Hb_006355_090 0.0536862077 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
4 Hb_004109_370 0.060260306 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_000037_220 0.0644485209 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]
6 Hb_009615_170 0.0682365302 - - PREDICTED: sphingoid long-chain bases kinase 1 isoform X1 [Jatropha curcas]
7 Hb_001318_020 0.0694289172 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
8 Hb_000608_230 0.0699449211 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
9 Hb_012092_060 0.0703667769 - - PREDICTED: KH domain-containing protein At4g18375 [Jatropha curcas]
10 Hb_005402_040 0.0710243104 - - PREDICTED: replication factor C subunit 1 [Jatropha curcas]
11 Hb_041327_010 0.0717346154 - - PREDICTED: la-related protein 1A isoform X1 [Jatropha curcas]
12 Hb_002686_040 0.0725330966 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
13 Hb_000174_060 0.0725439019 - - zinc finger family protein [Populus trichocarpa]
14 Hb_011618_090 0.0733151272 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
15 Hb_001754_040 0.0734393184 transcription factor TF Family: TRAF PREDICTED: uncharacterized protein LOC105643434 [Jatropha curcas]
16 Hb_001377_160 0.0734654754 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
17 Hb_005568_040 0.0736659165 - - PREDICTED: uncharacterized protein LOC105628163 isoform X2 [Jatropha curcas]
18 Hb_000395_070 0.0739043919 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
19 Hb_005357_260 0.0742700323 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
20 Hb_000130_020 0.0746130247 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]

Gene co-expression network

sample Hb_140049_080 Hb_140049_080 Hb_061878_010 Hb_061878_010 Hb_140049_080--Hb_061878_010 Hb_006355_090 Hb_006355_090 Hb_140049_080--Hb_006355_090 Hb_004109_370 Hb_004109_370 Hb_140049_080--Hb_004109_370 Hb_000037_220 Hb_000037_220 Hb_140049_080--Hb_000037_220 Hb_009615_170 Hb_009615_170 Hb_140049_080--Hb_009615_170 Hb_001318_020 Hb_001318_020 Hb_140049_080--Hb_001318_020 Hb_061878_010--Hb_006355_090 Hb_061878_010--Hb_004109_370 Hb_000139_130 Hb_000139_130 Hb_061878_010--Hb_000139_130 Hb_012092_060 Hb_012092_060 Hb_061878_010--Hb_012092_060 Hb_061878_010--Hb_000037_220 Hb_000369_130 Hb_000369_130 Hb_006355_090--Hb_000369_130 Hb_006355_090--Hb_001318_020 Hb_002815_030 Hb_002815_030 Hb_006355_090--Hb_002815_030 Hb_000089_120 Hb_000089_120 Hb_006355_090--Hb_000089_120 Hb_001085_110 Hb_001085_110 Hb_004109_370--Hb_001085_110 Hb_009252_050 Hb_009252_050 Hb_004109_370--Hb_009252_050 Hb_001552_030 Hb_001552_030 Hb_004109_370--Hb_001552_030 Hb_004109_370--Hb_000139_130 Hb_005563_060 Hb_005563_060 Hb_000037_220--Hb_005563_060 Hb_000556_220 Hb_000556_220 Hb_000037_220--Hb_000556_220 Hb_000003_100 Hb_000003_100 Hb_000037_220--Hb_000003_100 Hb_000094_310 Hb_000094_310 Hb_000037_220--Hb_000094_310 Hb_041327_010 Hb_041327_010 Hb_000037_220--Hb_041327_010 Hb_001821_090 Hb_001821_090 Hb_009615_170--Hb_001821_090 Hb_012395_140 Hb_012395_140 Hb_009615_170--Hb_012395_140 Hb_004884_150 Hb_004884_150 Hb_009615_170--Hb_004884_150 Hb_159558_010 Hb_159558_010 Hb_009615_170--Hb_159558_010 Hb_000579_230 Hb_000579_230 Hb_009615_170--Hb_000579_230 Hb_000174_060 Hb_000174_060 Hb_009615_170--Hb_000174_060 Hb_001318_020--Hb_009615_170 Hb_001377_160 Hb_001377_160 Hb_001318_020--Hb_001377_160 Hb_000130_020 Hb_000130_020 Hb_001318_020--Hb_000130_020 Hb_001318_020--Hb_061878_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3025 25.1645 16.0801 20.2915 19.68 20.5948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2666 8.27174 13.5221 27.4394 15.5711

CAGE analysis