Hb_140171_010

Information

Type -
Description -
Location Contig140171: 164-2763
Sequence    

Annotation

kegg
ID vvi:100258345
description magnesium transporter MRS2-3
nr
ID XP_012093151.1
description PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
swissprot
ID Q9LJN2
description Magnesium transporter MRS2-3 OS=Arabidopsis thaliana GN=MRS2-3 PE=2 SV=1
trembl
ID A0A067LBA4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16356 PE=4 SV=1
Gene Ontology
ID GO:0016020
description magnesium transporter mrs2-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140171_010 0.0 - - PREDICTED: magnesium transporter MRS2-3 [Jatropha curcas]
2 Hb_005730_030 0.0671628652 - - eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
3 Hb_002255_050 0.0754020261 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
4 Hb_007188_070 0.0803215866 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
5 Hb_002928_060 0.0844363507 - - PREDICTED: pre-rRNA-processing protein TSR1 homolog [Jatropha curcas]
6 Hb_033834_010 0.0871652985 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
7 Hb_004204_080 0.0888933282 - - diacylglycerol kinase, theta, putative [Ricinus communis]
8 Hb_022408_010 0.088953039 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 [Jatropha curcas]
9 Hb_001348_050 0.0927545538 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003362_040 0.0935585647 - - PREDICTED: probable methionine--tRNA ligase [Jatropha curcas]
11 Hb_000627_080 0.0945235 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 48-like [Jatropha curcas]
12 Hb_000048_140 0.0954506563 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
13 Hb_000592_080 0.0959829793 - - PREDICTED: thymidylate kinase [Jatropha curcas]
14 Hb_004055_040 0.0987166602 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
15 Hb_002301_220 0.0992632699 transcription factor TF Family: C3H PREDICTED: protein FRIGIDA-ESSENTIAL 1-like isoform X1 [Jatropha curcas]
16 Hb_002200_130 0.0995744376 - - PREDICTED: vacuolar protein sorting-associated protein 45 homolog [Jatropha curcas]
17 Hb_002255_070 0.1016805457 - - PREDICTED: isoleucine--tRNA ligase, cytoplasmic-like [Camelina sativa]
18 Hb_009627_010 0.1021292835 - - Protein dom-3, putative [Ricinus communis]
19 Hb_000244_250 0.1027616349 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 38 isoform X1 [Jatropha curcas]
20 Hb_000195_020 0.1033210289 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_140171_010 Hb_140171_010 Hb_005730_030 Hb_005730_030 Hb_140171_010--Hb_005730_030 Hb_002255_050 Hb_002255_050 Hb_140171_010--Hb_002255_050 Hb_007188_070 Hb_007188_070 Hb_140171_010--Hb_007188_070 Hb_002928_060 Hb_002928_060 Hb_140171_010--Hb_002928_060 Hb_033834_010 Hb_033834_010 Hb_140171_010--Hb_033834_010 Hb_004204_080 Hb_004204_080 Hb_140171_010--Hb_004204_080 Hb_004055_040 Hb_004055_040 Hb_005730_030--Hb_004055_040 Hb_000244_250 Hb_000244_250 Hb_005730_030--Hb_000244_250 Hb_005730_030--Hb_002928_060 Hb_022408_010 Hb_022408_010 Hb_005730_030--Hb_022408_010 Hb_005730_030--Hb_004204_080 Hb_000283_070 Hb_000283_070 Hb_002255_050--Hb_000283_070 Hb_006831_110 Hb_006831_110 Hb_002255_050--Hb_006831_110 Hb_002255_050--Hb_022408_010 Hb_002221_050 Hb_002221_050 Hb_002255_050--Hb_002221_050 Hb_009627_010 Hb_009627_010 Hb_002255_050--Hb_009627_010 Hb_000645_120 Hb_000645_120 Hb_002255_050--Hb_000645_120 Hb_003362_040 Hb_003362_040 Hb_007188_070--Hb_003362_040 Hb_002304_090 Hb_002304_090 Hb_007188_070--Hb_002304_090 Hb_011174_090 Hb_011174_090 Hb_007188_070--Hb_011174_090 Hb_007188_070--Hb_000645_120 Hb_007188_070--Hb_009627_010 Hb_002928_060--Hb_004055_040 Hb_002874_070 Hb_002874_070 Hb_002928_060--Hb_002874_070 Hb_000230_330 Hb_000230_330 Hb_002928_060--Hb_000230_330 Hb_001871_040 Hb_001871_040 Hb_002928_060--Hb_001871_040 Hb_002928_060--Hb_003362_040 Hb_033834_010--Hb_005730_030 Hb_175338_020 Hb_175338_020 Hb_033834_010--Hb_175338_020 Hb_004096_020 Hb_004096_020 Hb_033834_010--Hb_004096_020 Hb_001541_020 Hb_001541_020 Hb_033834_010--Hb_001541_020 Hb_000195_020 Hb_000195_020 Hb_033834_010--Hb_000195_020 Hb_002301_220 Hb_002301_220 Hb_033834_010--Hb_002301_220 Hb_001797_050 Hb_001797_050 Hb_004204_080--Hb_001797_050 Hb_005532_050 Hb_005532_050 Hb_004204_080--Hb_005532_050 Hb_000031_050 Hb_000031_050 Hb_004204_080--Hb_000031_050 Hb_004204_080--Hb_022408_010 Hb_004204_080--Hb_001541_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.75436 4.48246 4.24394 3.22562 10.188 10.8552
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.95566 2.94951 8.56301 4.65013 1.74848

CAGE analysis