Hb_140406_010

Information

Type -
Description -
Location Contig140406: 1-1000
Sequence    

Annotation

kegg
ID -
description -
nr
ID KDP29305.1
description hypothetical protein JCGZ_19461 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KAM7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19461 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140406_010 0.0 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
2 Hb_012120_010 0.0002246749 - - -
3 Hb_001476_010 0.0007151997 - - hypothetical protein JCGZ_15669 [Jatropha curcas]
4 Hb_051719_020 0.0008964065 - - PREDICTED: toll/interleukin-1 receptor-like protein [Jatropha curcas]
5 Hb_027556_030 0.0018629966 - - PREDICTED: pleiotropic drug resistance protein 1-like, partial [Gossypium raimondii]
6 Hb_060245_010 0.0020378752 - - -
7 Hb_001611_030 0.0023986896 - - -
8 Hb_001814_090 0.0024583604 - - PREDICTED: uncharacterized protein LOC105636644 [Jatropha curcas]
9 Hb_002400_120 0.0026979315 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
10 Hb_003894_130 0.0033243847 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_013405_120 0.0037258996 - - -
12 Hb_001621_080 0.0040793222 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
13 Hb_001740_010 0.0045829359 - - hypothetical protein JCGZ_18625 [Jatropha curcas]
14 Hb_032920_080 0.0046242999 - - PREDICTED: uncharacterized protein LOC104602705 [Nelumbo nucifera]
15 Hb_001568_100 0.005773098 - - hypothetical protein Csa_2G404850 [Cucumis sativus]
16 Hb_006124_020 0.0070570596 - - hypothetical protein JCGZ_13738 [Jatropha curcas]
17 Hb_002985_020 0.0075430116 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
18 Hb_000036_020 0.0075727154 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_007313_020 0.0081848832 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
20 Hb_004332_060 0.0084191153 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_140406_010 Hb_140406_010 Hb_012120_010 Hb_012120_010 Hb_140406_010--Hb_012120_010 Hb_001476_010 Hb_001476_010 Hb_140406_010--Hb_001476_010 Hb_051719_020 Hb_051719_020 Hb_140406_010--Hb_051719_020 Hb_027556_030 Hb_027556_030 Hb_140406_010--Hb_027556_030 Hb_060245_010 Hb_060245_010 Hb_140406_010--Hb_060245_010 Hb_001611_030 Hb_001611_030 Hb_140406_010--Hb_001611_030 Hb_012120_010--Hb_001476_010 Hb_012120_010--Hb_051719_020 Hb_012120_010--Hb_060245_010 Hb_012120_010--Hb_027556_030 Hb_001814_090 Hb_001814_090 Hb_012120_010--Hb_001814_090 Hb_001476_010--Hb_060245_010 Hb_001476_010--Hb_051719_020 Hb_001476_010--Hb_001814_090 Hb_001476_010--Hb_027556_030 Hb_051719_020--Hb_027556_030 Hb_051719_020--Hb_001611_030 Hb_002400_120 Hb_002400_120 Hb_051719_020--Hb_002400_120 Hb_027556_030--Hb_001611_030 Hb_027556_030--Hb_002400_120 Hb_003894_130 Hb_003894_130 Hb_027556_030--Hb_003894_130 Hb_013405_120 Hb_013405_120 Hb_027556_030--Hb_013405_120 Hb_060245_010--Hb_001814_090 Hb_032920_080 Hb_032920_080 Hb_060245_010--Hb_032920_080 Hb_060245_010--Hb_051719_020 Hb_001611_030--Hb_002400_120 Hb_001611_030--Hb_003894_130 Hb_001611_030--Hb_013405_120 Hb_001621_080 Hb_001621_080 Hb_001611_030--Hb_001621_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.111342 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0997727 0

CAGE analysis