Hb_140439_010

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig140439: 1253-3245
Sequence    

Annotation

kegg
ID rcu:RCOM_1327780
description protein with unknown function
nr
ID XP_002520074.1
description protein with unknown function [Ricinus communis]
swissprot
ID P0CB19
description Uncharacterized protein At3g50808 OS=Arabidopsis thaliana GN=At3g50808 PE=4 SV=1
trembl
ID B9S255
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1327780 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140439_010 0.0 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
2 Hb_002836_120 0.1768996653 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
3 Hb_000008_360 0.1800122669 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
4 Hb_000331_460 0.1883159543 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
5 Hb_010812_100 0.1891147847 - - phosphate transporter [Manihot esculenta]
6 Hb_000005_180 0.196091146 - - conserved hypothetical protein [Ricinus communis]
7 Hb_169116_010 0.1995118446 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
8 Hb_011379_010 0.2053568083 - - Thylakoid lumenal 25.6 kDa protein, chloroplast precursor, putative [Ricinus communis]
9 Hb_000390_110 0.2062056667 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
10 Hb_007110_010 0.213813226 - - PREDICTED: accessory gland protein Acp36DE [Jatropha curcas]
11 Hb_000935_030 0.2146771087 - - Squalene monooxygenase, putative [Ricinus communis]
12 Hb_019837_040 0.214846144 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
13 Hb_001864_020 0.2259099942 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
14 Hb_000740_040 0.2298842821 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
15 Hb_001488_030 0.2322261806 - - biotin carboxyl carrier protein [Vernicia fordii]
16 Hb_009111_020 0.2336356178 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
17 Hb_001004_150 0.2359810511 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-3-like [Jatropha curcas]
18 Hb_001059_160 0.2367517745 - - hexose transporter 1 [Hevea brasiliensis]
19 Hb_020805_080 0.2381487776 - - PREDICTED: uncharacterized protein LOC105635198 [Jatropha curcas]
20 Hb_014834_130 0.239456643 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_140439_010 Hb_140439_010 Hb_002836_120 Hb_002836_120 Hb_140439_010--Hb_002836_120 Hb_000008_360 Hb_000008_360 Hb_140439_010--Hb_000008_360 Hb_000331_460 Hb_000331_460 Hb_140439_010--Hb_000331_460 Hb_010812_100 Hb_010812_100 Hb_140439_010--Hb_010812_100 Hb_000005_180 Hb_000005_180 Hb_140439_010--Hb_000005_180 Hb_169116_010 Hb_169116_010 Hb_140439_010--Hb_169116_010 Hb_002836_120--Hb_000005_180 Hb_001488_030 Hb_001488_030 Hb_002836_120--Hb_001488_030 Hb_002836_120--Hb_000008_360 Hb_000390_110 Hb_000390_110 Hb_002836_120--Hb_000390_110 Hb_001329_090 Hb_001329_090 Hb_002836_120--Hb_001329_090 Hb_002836_120--Hb_169116_010 Hb_000008_360--Hb_000390_110 Hb_001056_030 Hb_001056_030 Hb_000008_360--Hb_001056_030 Hb_000008_360--Hb_000005_180 Hb_000008_360--Hb_010812_100 Hb_002284_310 Hb_002284_310 Hb_000331_460--Hb_002284_310 Hb_001004_150 Hb_001004_150 Hb_000331_460--Hb_001004_150 Hb_000032_440 Hb_000032_440 Hb_000331_460--Hb_000032_440 Hb_001545_100 Hb_001545_100 Hb_000331_460--Hb_001545_100 Hb_000603_230 Hb_000603_230 Hb_000331_460--Hb_000603_230 Hb_004225_080 Hb_004225_080 Hb_000331_460--Hb_004225_080 Hb_010812_100--Hb_000005_180 Hb_004093_020 Hb_004093_020 Hb_010812_100--Hb_004093_020 Hb_010812_100--Hb_002836_120 Hb_010812_100--Hb_169116_010 Hb_000005_180--Hb_001488_030 Hb_000005_180--Hb_001329_090 Hb_000005_180--Hb_169116_010 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000442_040 Hb_000442_040 Hb_000005_180--Hb_000442_040 Hb_169116_010--Hb_001488_030 Hb_019837_040 Hb_019837_040 Hb_169116_010--Hb_019837_040 Hb_000105_100 Hb_000105_100 Hb_169116_010--Hb_000105_100 Hb_169116_010--Hb_000442_040 Hb_009851_010 Hb_009851_010 Hb_169116_010--Hb_009851_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75375 0 5.16375 2.65862 0.23988 0.337683
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93793 3.79624 3.39682 0.0607836 2.64577

CAGE analysis