Hb_140459_010

Information

Type -
Description -
Location Contig140459: 2790-4705
Sequence    

Annotation

kegg
ID rcu:RCOM_1077810
description thioredoxin f-type, putative
nr
ID XP_002514830.1
description thioredoxin f-type, putative [Ricinus communis]
swissprot
ID Q9XFH9
description Thioredoxin F2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1
trembl
ID B9RM61
description Thioredoxin f-type, putative OS=Ricinus communis GN=RCOM_1077810 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin f- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140459_010 0.0 - - thioredoxin f-type, putative [Ricinus communis]
2 Hb_183612_070 0.133087717 - - unnamed protein product [Vitis vinifera]
3 Hb_020378_060 0.1466591911 - - PREDICTED: methyltransferase-like protein 13 [Jatropha curcas]
4 Hb_001138_060 0.1484125604 - - hypothetical protein CICLE_v10028086mg [Citrus clementina]
5 Hb_002475_140 0.1535053961 - - PREDICTED: protein GAMETE EXPRESSED 1 [Jatropha curcas]
6 Hb_003211_030 0.1537299915 - - -
7 Hb_001863_020 0.1539389781 - - PREDICTED: protein FAM91A1 isoform X1 [Jatropha curcas]
8 Hb_000656_310 0.15438196 - - PREDICTED: cation/calcium exchanger 4-like [Jatropha curcas]
9 Hb_009615_120 0.1548644711 - - gypsy/Ty-3 retroelement polyprotein; 69905-74404 [Arabidopsis thaliana]
10 Hb_000615_050 0.157586749 - - Potassium transporter 11 family protein [Populus trichocarpa]
11 Hb_008179_010 0.1578155587 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
12 Hb_002780_030 0.1586089369 - - PREDICTED: molybdate transporter 1 [Jatropha curcas]
13 Hb_001723_060 0.1634979026 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase PREDICTED: LOW QUALITY PROTEIN: dihydrolipoyl dehydrogenase 2, mitochondrial [Populus euphratica]
14 Hb_003124_110 0.1642837107 - - hypothetical protein VITISV_026680 [Vitis vinifera]
15 Hb_005305_020 0.1687597632 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]
16 Hb_000139_340 0.1705978376 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002360_030 0.1732532241 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
18 Hb_183086_050 0.1756547407 - - PREDICTED: metal-nicotianamine transporter YSL3 [Jatropha curcas]
19 Hb_001214_180 0.1757570231 - - -
20 Hb_001898_180 0.1759736637 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_140459_010 Hb_140459_010 Hb_183612_070 Hb_183612_070 Hb_140459_010--Hb_183612_070 Hb_020378_060 Hb_020378_060 Hb_140459_010--Hb_020378_060 Hb_001138_060 Hb_001138_060 Hb_140459_010--Hb_001138_060 Hb_002475_140 Hb_002475_140 Hb_140459_010--Hb_002475_140 Hb_003211_030 Hb_003211_030 Hb_140459_010--Hb_003211_030 Hb_001863_020 Hb_001863_020 Hb_140459_010--Hb_001863_020 Hb_003124_110 Hb_003124_110 Hb_183612_070--Hb_003124_110 Hb_001214_180 Hb_001214_180 Hb_183612_070--Hb_001214_180 Hb_000615_050 Hb_000615_050 Hb_183612_070--Hb_000615_050 Hb_100886_010 Hb_100886_010 Hb_183612_070--Hb_100886_010 Hb_000139_340 Hb_000139_340 Hb_183612_070--Hb_000139_340 Hb_001898_180 Hb_001898_180 Hb_020378_060--Hb_001898_180 Hb_010577_040 Hb_010577_040 Hb_020378_060--Hb_010577_040 Hb_000388_060 Hb_000388_060 Hb_020378_060--Hb_000388_060 Hb_000983_070 Hb_000983_070 Hb_020378_060--Hb_000983_070 Hb_000622_290 Hb_000622_290 Hb_020378_060--Hb_000622_290 Hb_005489_090 Hb_005489_090 Hb_020378_060--Hb_005489_090 Hb_001723_060 Hb_001723_060 Hb_001138_060--Hb_001723_060 Hb_002762_110 Hb_002762_110 Hb_001138_060--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001138_060--Hb_009778_060 Hb_001195_450 Hb_001195_450 Hb_001138_060--Hb_001195_450 Hb_000318_130 Hb_000318_130 Hb_001138_060--Hb_000318_130 Hb_000077_150 Hb_000077_150 Hb_001138_060--Hb_000077_150 Hb_008179_010 Hb_008179_010 Hb_002475_140--Hb_008179_010 Hb_000086_390 Hb_000086_390 Hb_002475_140--Hb_000086_390 Hb_002780_030 Hb_002780_030 Hb_002475_140--Hb_002780_030 Hb_002475_140--Hb_020378_060 Hb_000032_400 Hb_000032_400 Hb_002475_140--Hb_000032_400 Hb_000392_160 Hb_000392_160 Hb_003211_030--Hb_000392_160 Hb_000309_050 Hb_000309_050 Hb_003211_030--Hb_000309_050 Hb_000183_030 Hb_000183_030 Hb_003211_030--Hb_000183_030 Hb_002611_010 Hb_002611_010 Hb_003211_030--Hb_002611_010 Hb_003211_030--Hb_001138_060 Hb_000656_310 Hb_000656_310 Hb_003211_030--Hb_000656_310 Hb_001863_020--Hb_001138_060 Hb_001946_380 Hb_001946_380 Hb_001863_020--Hb_001946_380 Hb_001399_010 Hb_001399_010 Hb_001863_020--Hb_001399_010 Hb_000525_050 Hb_000525_050 Hb_001863_020--Hb_000525_050 Hb_042202_060 Hb_042202_060 Hb_001863_020--Hb_042202_060 Hb_005167_020 Hb_005167_020 Hb_001863_020--Hb_005167_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.94042 8.0119 5.09544 12.6179 1.28594 1.30537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1679 7.26704 11.0552 6.95188 27.4916

CAGE analysis