Hb_140506_010

Information

Type -
Description -
Location Contig140506: 3193-4920
Sequence    

Annotation

kegg
ID pmum:103338867
description pentatricopeptide repeat-containing protein At4g33170-like
nr
ID XP_012079321.1
description PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
swissprot
ID Q9SMZ2
description Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=3 SV=1
trembl
ID A0A067LBG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17413 PE=4 SV=1
Gene Ontology
ID GO:0008568
description pentatricopeptide repeat-containing protein at4g33170-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140506_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Jatropha curcas]
2 Hb_001818_070 0.0513617198 - - carbon catabolite repressor protein, putative [Ricinus communis]
3 Hb_005541_010 0.0641327389 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
4 Hb_021576_110 0.0702735188 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
5 Hb_000049_260 0.0728866164 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_000125_170 0.0782247862 transcription factor TF Family: mTERF hypothetical protein VITISV_028994 [Vitis vinifera]
7 Hb_004767_050 0.0801285395 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
8 Hb_010222_050 0.0801825757 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
9 Hb_005675_040 0.0803399442 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
10 Hb_000331_670 0.0851489174 - - PREDICTED: protein tipD [Jatropha curcas]
11 Hb_001248_060 0.0863706616 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000080_150 0.0877745182 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X2 [Jatropha curcas]
13 Hb_013399_100 0.0881994904 - - conserved hypothetical protein [Ricinus communis]
14 Hb_048219_010 0.0886848855 - - coronatine-insensitive 1 [Hevea brasiliensis]
15 Hb_011491_010 0.0887890926 - - Protein YME1, putative [Ricinus communis]
16 Hb_001838_060 0.0888741569 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
17 Hb_003052_140 0.0888938475 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
18 Hb_012564_030 0.0892814819 - - coronatine-insensitive 1 [Hevea brasiliensis]
19 Hb_002234_170 0.0895294032 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
20 Hb_000563_320 0.0907596578 - - PREDICTED: induced during hyphae development protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_140506_010 Hb_140506_010 Hb_001818_070 Hb_001818_070 Hb_140506_010--Hb_001818_070 Hb_005541_010 Hb_005541_010 Hb_140506_010--Hb_005541_010 Hb_021576_110 Hb_021576_110 Hb_140506_010--Hb_021576_110 Hb_000049_260 Hb_000049_260 Hb_140506_010--Hb_000049_260 Hb_000125_170 Hb_000125_170 Hb_140506_010--Hb_000125_170 Hb_004767_050 Hb_004767_050 Hb_140506_010--Hb_004767_050 Hb_001838_060 Hb_001838_060 Hb_001818_070--Hb_001838_060 Hb_011491_010 Hb_011491_010 Hb_001818_070--Hb_011491_010 Hb_001818_070--Hb_004767_050 Hb_003211_020 Hb_003211_020 Hb_001818_070--Hb_003211_020 Hb_048219_010 Hb_048219_010 Hb_001818_070--Hb_048219_010 Hb_005016_160 Hb_005016_160 Hb_005541_010--Hb_005016_160 Hb_003052_140 Hb_003052_140 Hb_005541_010--Hb_003052_140 Hb_000334_220 Hb_000334_220 Hb_005541_010--Hb_000334_220 Hb_012564_030 Hb_012564_030 Hb_005541_010--Hb_012564_030 Hb_002411_030 Hb_002411_030 Hb_005541_010--Hb_002411_030 Hb_000331_670 Hb_000331_670 Hb_021576_110--Hb_000331_670 Hb_000868_110 Hb_000868_110 Hb_021576_110--Hb_000868_110 Hb_021576_110--Hb_001818_070 Hb_001157_040 Hb_001157_040 Hb_021576_110--Hb_001157_040 Hb_021576_110--Hb_001838_060 Hb_020831_030 Hb_020831_030 Hb_000049_260--Hb_020831_030 Hb_002818_030 Hb_002818_030 Hb_000049_260--Hb_002818_030 Hb_002234_170 Hb_002234_170 Hb_000049_260--Hb_002234_170 Hb_001195_530 Hb_001195_530 Hb_000049_260--Hb_001195_530 Hb_002798_070 Hb_002798_070 Hb_000049_260--Hb_002798_070 Hb_013399_100 Hb_013399_100 Hb_000049_260--Hb_013399_100 Hb_000181_070 Hb_000181_070 Hb_000125_170--Hb_000181_070 Hb_000125_170--Hb_003052_140 Hb_031527_040 Hb_031527_040 Hb_000125_170--Hb_031527_040 Hb_000373_150 Hb_000373_150 Hb_000125_170--Hb_000373_150 Hb_007416_180 Hb_007416_180 Hb_000125_170--Hb_007416_180 Hb_003464_050 Hb_003464_050 Hb_000125_170--Hb_003464_050 Hb_004767_050--Hb_048219_010 Hb_000592_090 Hb_000592_090 Hb_004767_050--Hb_000592_090 Hb_003467_020 Hb_003467_020 Hb_004767_050--Hb_003467_020 Hb_004767_050--Hb_011491_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.66858 2.6323 1.18467 1.49102 1.93677 2.41172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.00997 2.17476 2.09264 1.02485 1.09964

CAGE analysis