Hb_140595_030

Information

Type -
Description -
Location Contig140595: 6694-7257
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10998: 6901-7336
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140595_030 0.0 - - -
2 Hb_140595_020 0.0393590795 - - PREDICTED: vegetative cell wall protein gp1-like [Solanum lycopersicum]
3 Hb_000155_230 0.0659023931 - - rac gtpase, putative [Ricinus communis]
4 Hb_001105_150 0.0715909696 - - GERMIN-LIKE protein 10 [Populus trichocarpa]
5 Hb_001104_070 0.0718899621 - - hypothetical protein SORBIDRAFT_10g024640 [Sorghum bicolor]
6 Hb_000920_340 0.0723887162 - - o-methyltransferase, putative [Ricinus communis]
7 Hb_000260_520 0.0787413335 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_189208_080 0.0804438486 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter B family member 11-like isoform X1 [Jatropha curcas]
9 Hb_001186_040 0.0816165235 - - Peroxidase 3 precursor, putative [Ricinus communis]
10 Hb_028818_020 0.0848221851 - - PREDICTED: glucomannan 4-beta-mannosyltransferase 9-like [Jatropha curcas]
11 Hb_007718_040 0.0876614151 - - hypothetical protein PRUPE_ppb025054mg [Prunus persica]
12 Hb_080048_030 0.0947449761 desease resistance Gene Name: NB-ARC Leucine-rich repeat containing protein [Theobroma cacao]
13 Hb_002675_220 0.1037607223 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]
14 Hb_001123_300 0.1123588933 - - hypothetical protein POPTR_0003s16270g [Populus trichocarpa]
15 Hb_008695_060 0.1135662135 - - unknown [Populus trichocarpa x Populus deltoides]
16 Hb_002119_150 0.1138684302 - - hypothetical protein POPTR_0008s13870g [Populus trichocarpa]
17 Hb_018487_040 0.1157495078 - - PREDICTED: 3-ketoacyl-CoA synthase 6 [Jatropha curcas]
18 Hb_000254_080 0.1210084527 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
19 Hb_001269_540 0.1219508759 - - hypothetical protein VITISV_038016 [Vitis vinifera]
20 Hb_000230_490 0.1238268984 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_140595_030 Hb_140595_030 Hb_140595_020 Hb_140595_020 Hb_140595_030--Hb_140595_020 Hb_000155_230 Hb_000155_230 Hb_140595_030--Hb_000155_230 Hb_001105_150 Hb_001105_150 Hb_140595_030--Hb_001105_150 Hb_001104_070 Hb_001104_070 Hb_140595_030--Hb_001104_070 Hb_000920_340 Hb_000920_340 Hb_140595_030--Hb_000920_340 Hb_000260_520 Hb_000260_520 Hb_140595_030--Hb_000260_520 Hb_001186_040 Hb_001186_040 Hb_140595_020--Hb_001186_040 Hb_140595_020--Hb_000260_520 Hb_140595_020--Hb_001104_070 Hb_140595_020--Hb_000155_230 Hb_140595_020--Hb_001105_150 Hb_000155_230--Hb_001105_150 Hb_028818_020 Hb_028818_020 Hb_000155_230--Hb_028818_020 Hb_001123_300 Hb_001123_300 Hb_000155_230--Hb_001123_300 Hb_101705_040 Hb_101705_040 Hb_000155_230--Hb_101705_040 Hb_001105_150--Hb_028818_020 Hb_001105_150--Hb_001123_300 Hb_002675_220 Hb_002675_220 Hb_001105_150--Hb_002675_220 Hb_001105_150--Hb_001104_070 Hb_001104_070--Hb_002675_220 Hb_080048_030 Hb_080048_030 Hb_001104_070--Hb_080048_030 Hb_018487_040 Hb_018487_040 Hb_001104_070--Hb_018487_040 Hb_189208_080 Hb_189208_080 Hb_001104_070--Hb_189208_080 Hb_002250_040 Hb_002250_040 Hb_001104_070--Hb_002250_040 Hb_007718_040 Hb_007718_040 Hb_000920_340--Hb_007718_040 Hb_000920_340--Hb_189208_080 Hb_000920_340--Hb_001104_070 Hb_000920_340--Hb_080048_030 Hb_002445_020 Hb_002445_020 Hb_000920_340--Hb_002445_020 Hb_000260_520--Hb_001104_070 Hb_005062_100 Hb_005062_100 Hb_000260_520--Hb_005062_100 Hb_000260_520--Hb_018487_040 Hb_002119_150 Hb_002119_150 Hb_000260_520--Hb_002119_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 21.4441 17.3982 129.918 0.27528 0.319704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.60419 329.474

CAGE analysis