Hb_140627_020

Information

Type -
Description -
Location Contig140627: 9503-18035
Sequence    

Annotation

kegg
ID rcu:RCOM_0278610
description hypothetical protein
nr
ID XP_012076058.1
description PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12768 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11002: 9657-17926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140627_020 0.0 - - PREDICTED: uncharacterized protein LOC105637253 isoform X1 [Jatropha curcas]
2 Hb_000556_220 0.0724169791 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 2-like [Jatropha curcas]
3 Hb_002235_200 0.0786047016 - - pattern formation protein, putative [Ricinus communis]
4 Hb_000720_130 0.079395004 - - hypothetical protein PRUPE_ppa012392mg [Prunus persica]
5 Hb_002311_100 0.0802906507 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 11-like [Jatropha curcas]
6 Hb_013358_010 0.0839289409 - - hypothetical protein JCGZ_07102 [Jatropha curcas]
7 Hb_005656_040 0.0875522906 desease resistance Gene Name: T2SE ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_010180_060 0.0883686404 - - PREDICTED: uncharacterized protein LOC105648049 [Jatropha curcas]
9 Hb_004374_110 0.0886331533 - - PREDICTED: uncharacterized protein LOC105645768 [Jatropha curcas]
10 Hb_004410_120 0.0887331138 - - PREDICTED: uncharacterized protein LOC105633877 isoform X1 [Jatropha curcas]
11 Hb_004410_050 0.0899302817 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
12 Hb_004019_120 0.0899410098 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
13 Hb_000174_290 0.0899902301 - - PREDICTED: conserved oligomeric Golgi complex subunit 1 [Jatropha curcas]
14 Hb_009898_010 0.0902279495 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
15 Hb_000215_140 0.0905619573 - - PREDICTED: phosphoinositide 3-kinase regulatory subunit 4-like [Malus domestica]
16 Hb_005486_030 0.0906123365 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
17 Hb_000046_190 0.0925737253 - - PREDICTED: uncharacterized protein LOC105647118 [Jatropha curcas]
18 Hb_002521_020 0.0956450742 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
19 Hb_008053_040 0.0960933866 - - PREDICTED: mediator of RNA polymerase II transcription subunit 12-like [Pyrus x bretschneideri]
20 Hb_003805_040 0.096239536 - - Sacsin [Glycine soja]

Gene co-expression network

sample Hb_140627_020 Hb_140627_020 Hb_000556_220 Hb_000556_220 Hb_140627_020--Hb_000556_220 Hb_002235_200 Hb_002235_200 Hb_140627_020--Hb_002235_200 Hb_000720_130 Hb_000720_130 Hb_140627_020--Hb_000720_130 Hb_002311_100 Hb_002311_100 Hb_140627_020--Hb_002311_100 Hb_013358_010 Hb_013358_010 Hb_140627_020--Hb_013358_010 Hb_005656_040 Hb_005656_040 Hb_140627_020--Hb_005656_040 Hb_000037_220 Hb_000037_220 Hb_000556_220--Hb_000037_220 Hb_085781_020 Hb_085781_020 Hb_000556_220--Hb_085781_020 Hb_000556_220--Hb_002311_100 Hb_004019_120 Hb_004019_120 Hb_000556_220--Hb_004019_120 Hb_003060_060 Hb_003060_060 Hb_000556_220--Hb_003060_060 Hb_004374_110 Hb_004374_110 Hb_002235_200--Hb_004374_110 Hb_003607_070 Hb_003607_070 Hb_002235_200--Hb_003607_070 Hb_006839_010 Hb_006839_010 Hb_002235_200--Hb_006839_010 Hb_000123_180 Hb_000123_180 Hb_002235_200--Hb_000123_180 Hb_003125_170 Hb_003125_170 Hb_002235_200--Hb_003125_170 Hb_007632_010 Hb_007632_010 Hb_000720_130--Hb_007632_010 Hb_000215_140 Hb_000215_140 Hb_000720_130--Hb_000215_140 Hb_007818_010 Hb_007818_010 Hb_000720_130--Hb_007818_010 Hb_000412_010 Hb_000412_010 Hb_000720_130--Hb_000412_010 Hb_002909_120 Hb_002909_120 Hb_000720_130--Hb_002909_120 Hb_002311_100--Hb_005656_040 Hb_000723_220 Hb_000723_220 Hb_002311_100--Hb_000723_220 Hb_000094_310 Hb_000094_310 Hb_002311_100--Hb_000094_310 Hb_009898_010 Hb_009898_010 Hb_002311_100--Hb_009898_010 Hb_000696_050 Hb_000696_050 Hb_002311_100--Hb_000696_050 Hb_004410_120 Hb_004410_120 Hb_013358_010--Hb_004410_120 Hb_143766_060 Hb_143766_060 Hb_013358_010--Hb_143766_060 Hb_000260_070 Hb_000260_070 Hb_013358_010--Hb_000260_070 Hb_001628_070 Hb_001628_070 Hb_013358_010--Hb_001628_070 Hb_000174_290 Hb_000174_290 Hb_013358_010--Hb_000174_290 Hb_001217_050 Hb_001217_050 Hb_013358_010--Hb_001217_050 Hb_001188_020 Hb_001188_020 Hb_005656_040--Hb_001188_020 Hb_005656_040--Hb_000412_010 Hb_005656_040--Hb_001628_070 Hb_009767_080 Hb_009767_080 Hb_005656_040--Hb_009767_080 Hb_000206_040 Hb_000206_040 Hb_005656_040--Hb_000206_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88635 13.9571 4.46844 10.5018 9.67474 10.8213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.54711 3.60219 12.5152 9.85273 14.7535

CAGE analysis