Hb_140833_010

Information

Type -
Description -
Location Contig140833: 944-2564
Sequence    

Annotation

kegg
ID pop:POPTR_0019s03960g
description POPTRDRAFT_248252; hypothetical protein
nr
ID XP_012089380.1
description PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
swissprot
ID F4KFT7
description Probable aminopyrimidine aminohydrolase, mitochondrial OS=Arabidopsis thaliana GN=TNEA_C PE=2 SV=1
trembl
ID A0A067JLT4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23571 PE=4 SV=1
Gene Ontology
ID GO:0005829
description upf0655 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140833_010 0.0 - - PREDICTED: uncharacterized protein LOC105647767 [Jatropha curcas]
2 Hb_001373_110 0.0810715545 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
3 Hb_000000_360 0.0864225505 - - PREDICTED: methyltransferase-like protein 2 [Populus euphratica]
4 Hb_000661_140 0.0892945629 - - PREDICTED: uncharacterized protein LOC105648317 isoform X2 [Jatropha curcas]
5 Hb_005588_030 0.1039558795 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
6 Hb_000694_040 0.1084767212 - - Uncharacterized protein isoform 1 [Theobroma cacao]
7 Hb_011013_010 0.111351288 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
8 Hb_002639_150 0.1126337997 - - -
9 Hb_000853_430 0.1136095168 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]
10 Hb_058972_010 0.1141221655 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
11 Hb_010315_060 0.1157767852 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
12 Hb_000976_260 0.1163215339 - - -
13 Hb_000012_020 0.1182839382 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
14 Hb_002192_080 0.1195842232 - - hypothetical protein B456_013G069200 [Gossypium raimondii]
15 Hb_022132_010 0.1196665592 - - unknown [Medicago truncatula]
16 Hb_001195_260 0.1209632429 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
17 Hb_073973_130 0.1226529142 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
18 Hb_003050_200 0.1227879643 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
19 Hb_001195_040 0.1229670566 - - PREDICTED: proteasome subunit alpha type-1-B-like [Gossypium raimondii]
20 Hb_001012_010 0.1233056879 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_140833_010 Hb_140833_010 Hb_001373_110 Hb_001373_110 Hb_140833_010--Hb_001373_110 Hb_000000_360 Hb_000000_360 Hb_140833_010--Hb_000000_360 Hb_000661_140 Hb_000661_140 Hb_140833_010--Hb_000661_140 Hb_005588_030 Hb_005588_030 Hb_140833_010--Hb_005588_030 Hb_000694_040 Hb_000694_040 Hb_140833_010--Hb_000694_040 Hb_011013_010 Hb_011013_010 Hb_140833_010--Hb_011013_010 Hb_001373_110--Hb_011013_010 Hb_001373_110--Hb_000661_140 Hb_000976_260 Hb_000976_260 Hb_001373_110--Hb_000976_260 Hb_000012_020 Hb_000012_020 Hb_001373_110--Hb_000012_020 Hb_002450_040 Hb_002450_040 Hb_001373_110--Hb_002450_040 Hb_000000_360--Hb_000694_040 Hb_001579_230 Hb_001579_230 Hb_000000_360--Hb_001579_230 Hb_000000_360--Hb_005588_030 Hb_010315_060 Hb_010315_060 Hb_000000_360--Hb_010315_060 Hb_002820_110 Hb_002820_110 Hb_000000_360--Hb_002820_110 Hb_002639_150 Hb_002639_150 Hb_000661_140--Hb_002639_150 Hb_000926_310 Hb_000926_310 Hb_000661_140--Hb_000926_310 Hb_000661_140--Hb_011013_010 Hb_004785_190 Hb_004785_190 Hb_000661_140--Hb_004785_190 Hb_005288_150 Hb_005288_150 Hb_000661_140--Hb_005288_150 Hb_020367_050 Hb_020367_050 Hb_000661_140--Hb_020367_050 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004116_060 Hb_004116_060 Hb_005588_030--Hb_004116_060 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_120410_010 Hb_120410_010 Hb_005588_030--Hb_120410_010 Hb_004934_030 Hb_004934_030 Hb_000694_040--Hb_004934_030 Hb_007477_070 Hb_007477_070 Hb_000694_040--Hb_007477_070 Hb_002374_170 Hb_002374_170 Hb_000694_040--Hb_002374_170 Hb_000000_210 Hb_000000_210 Hb_000694_040--Hb_000000_210 Hb_004787_060 Hb_004787_060 Hb_000694_040--Hb_004787_060 Hb_011013_010--Hb_002639_150 Hb_012725_070 Hb_012725_070 Hb_011013_010--Hb_012725_070 Hb_011013_010--Hb_005288_150 Hb_004531_070 Hb_004531_070 Hb_011013_010--Hb_004531_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.08758 0.784815 3.15681 0.985816 1.93706 2.27017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11376 2.40931 1.4564 0.827015 0.38889

CAGE analysis