Hb_140848_010

Information

Type -
Description -
Location Contig140848: 1897-4005
Sequence    

Annotation

kegg
ID pop:POPTR_0014s17480g
description POPTRDRAFT_1100193; hypothetical protein
nr
ID XP_002320566.2
description hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IB16
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s17480g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11063: 1846-2503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_140848_010 0.0 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]
2 Hb_002735_010 0.0999351938 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 44 [Prunus mume]
3 Hb_001148_040 0.1152048425 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
4 Hb_015473_010 0.1317389397 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
5 Hb_002053_090 0.1399603462 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000152_250 0.1411687169 - - PREDICTED: uncharacterized protein LOC105648569 [Jatropha curcas]
7 Hb_002110_210 0.1416962527 - - purine transporter, putative [Ricinus communis]
8 Hb_010381_110 0.1447911993 - - PRA1 family protein [Theobroma cacao]
9 Hb_006364_020 0.1455019107 - - PREDICTED: leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 [Jatropha curcas]
10 Hb_001401_070 0.1473771886 - - glycogenin, putative [Ricinus communis]
11 Hb_000586_100 0.153617437 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003371_260 0.1575769822 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
13 Hb_003439_090 0.1594942373 - - kinase, putative [Ricinus communis]
14 Hb_000111_190 0.1604746511 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
15 Hb_000907_120 0.1623227453 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
16 Hb_000127_070 0.1638679076 - - PREDICTED: peroxidase 12-like [Jatropha curcas]
17 Hb_008406_020 0.164315222 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
18 Hb_004218_230 0.165573528 - - Peptide transporter, putative [Ricinus communis]
19 Hb_002241_020 0.1663088504 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
20 Hb_004837_170 0.1692013625 - - PREDICTED: uncharacterized protein LOC105648284 [Jatropha curcas]

Gene co-expression network

sample Hb_140848_010 Hb_140848_010 Hb_002735_010 Hb_002735_010 Hb_140848_010--Hb_002735_010 Hb_001148_040 Hb_001148_040 Hb_140848_010--Hb_001148_040 Hb_015473_010 Hb_015473_010 Hb_140848_010--Hb_015473_010 Hb_002053_090 Hb_002053_090 Hb_140848_010--Hb_002053_090 Hb_000152_250 Hb_000152_250 Hb_140848_010--Hb_000152_250 Hb_002110_210 Hb_002110_210 Hb_140848_010--Hb_002110_210 Hb_002735_010--Hb_002110_210 Hb_002735_010--Hb_000152_250 Hb_002735_010--Hb_015473_010 Hb_000127_070 Hb_000127_070 Hb_002735_010--Hb_000127_070 Hb_002241_020 Hb_002241_020 Hb_002735_010--Hb_002241_020 Hb_000007_160 Hb_000007_160 Hb_001148_040--Hb_000007_160 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_002609_150 Hb_002609_150 Hb_001148_040--Hb_002609_150 Hb_000778_020 Hb_000778_020 Hb_001148_040--Hb_000778_020 Hb_015473_010--Hb_000152_250 Hb_000521_210 Hb_000521_210 Hb_015473_010--Hb_000521_210 Hb_015473_010--Hb_002110_210 Hb_003439_090 Hb_003439_090 Hb_015473_010--Hb_003439_090 Hb_001823_070 Hb_001823_070 Hb_015473_010--Hb_001823_070 Hb_050898_010 Hb_050898_010 Hb_002053_090--Hb_050898_010 Hb_000002_230 Hb_000002_230 Hb_002053_090--Hb_000002_230 Hb_005695_020 Hb_005695_020 Hb_002053_090--Hb_005695_020 Hb_000316_080 Hb_000316_080 Hb_002053_090--Hb_000316_080 Hb_000720_060 Hb_000720_060 Hb_002053_090--Hb_000720_060 Hb_000907_120 Hb_000907_120 Hb_000152_250--Hb_000907_120 Hb_000152_250--Hb_003439_090 Hb_000152_250--Hb_000521_210 Hb_006020_010 Hb_006020_010 Hb_000152_250--Hb_006020_010 Hb_002110_210--Hb_002241_020 Hb_004218_230 Hb_004218_230 Hb_002110_210--Hb_004218_230 Hb_005147_020 Hb_005147_020 Hb_002110_210--Hb_005147_020 Hb_002110_210--Hb_000127_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.171515 5.06387 0.278357 3.68893 0.120576 0.202639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0386074 0 2.99465 0.395622

CAGE analysis