Hb_141131_010

Information

Type -
Description -
Location Contig141131: 919-1534
Sequence    

Annotation

kegg
ID rcu:RCOM_1374830
description Diphthamide biosynthesis protein, putative
nr
ID XP_002529006.1
description Diphthamide biosynthesis protein, putative [Ricinus communis]
swissprot
ID Q4PA25
description Diphthamide biosynthesis protein 1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=DPH1 PE=3 SV=1
trembl
ID B9SSN7
description Diphthamide biosynthesis protein, putative OS=Ricinus communis GN=RCOM_1374830 PE=4 SV=1
Gene Ontology
ID GO:0005737
description diphthamide biosynthesis protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141131_010 0.0 - - Diphthamide biosynthesis protein, putative [Ricinus communis]
2 Hb_004944_010 0.0597129707 - - small nuclear ribonucleoprotein E [Hevea brasiliensis]
3 Hb_001124_210 0.0624409993 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003038_030 0.062953311 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
5 Hb_000620_080 0.0683877 - - hypothetical protein F775_32679 [Aegilops tauschii]
6 Hb_004545_060 0.0701172174 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
7 Hb_002217_310 0.0714122062 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
8 Hb_002078_150 0.0738933354 - - protein with unknown function [Ricinus communis]
9 Hb_002659_070 0.0751556115 - - PREDICTED: RNA-binding protein 24-A [Jatropha curcas]
10 Hb_000204_040 0.0761010384 - - PREDICTED: polyadenylate-binding protein-interacting protein 6 [Jatropha curcas]
11 Hb_000690_080 0.0771665019 transcription factor TF Family: HB -
12 Hb_000349_060 0.0771782514 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
13 Hb_004128_190 0.0794090276 - - PREDICTED: dirigent protein 17-like [Jatropha curcas]
14 Hb_148912_010 0.0816362049 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000749_150 0.0848744916 - - -
16 Hb_000175_070 0.084984826 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
17 Hb_003874_020 0.0866237177 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
18 Hb_007193_100 0.0872295636 - - syntaxin family protein [Populus trichocarpa]
19 Hb_125000_010 0.0876071509 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
20 Hb_000386_040 0.0879126595 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]

Gene co-expression network

sample Hb_141131_010 Hb_141131_010 Hb_004944_010 Hb_004944_010 Hb_141131_010--Hb_004944_010 Hb_001124_210 Hb_001124_210 Hb_141131_010--Hb_001124_210 Hb_003038_030 Hb_003038_030 Hb_141131_010--Hb_003038_030 Hb_000620_080 Hb_000620_080 Hb_141131_010--Hb_000620_080 Hb_004545_060 Hb_004545_060 Hb_141131_010--Hb_004545_060 Hb_002217_310 Hb_002217_310 Hb_141131_010--Hb_002217_310 Hb_000349_060 Hb_000349_060 Hb_004944_010--Hb_000349_060 Hb_000690_080 Hb_000690_080 Hb_004944_010--Hb_000690_080 Hb_000457_110 Hb_000457_110 Hb_004944_010--Hb_000457_110 Hb_003874_020 Hb_003874_020 Hb_004944_010--Hb_003874_020 Hb_004944_010--Hb_003038_030 Hb_003847_080 Hb_003847_080 Hb_001124_210--Hb_003847_080 Hb_002078_150 Hb_002078_150 Hb_001124_210--Hb_002078_150 Hb_158092_070 Hb_158092_070 Hb_001124_210--Hb_158092_070 Hb_123475_010 Hb_123475_010 Hb_001124_210--Hb_123475_010 Hb_000363_500 Hb_000363_500 Hb_001124_210--Hb_000363_500 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_003038_030--Hb_004545_060 Hb_004128_190 Hb_004128_190 Hb_000620_080--Hb_004128_190 Hb_001454_140 Hb_001454_140 Hb_000620_080--Hb_001454_140 Hb_004374_200 Hb_004374_200 Hb_000620_080--Hb_004374_200 Hb_000620_080--Hb_001124_210 Hb_000771_100 Hb_000771_100 Hb_000620_080--Hb_000771_100 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_000069_160 Hb_000069_160 Hb_002217_310--Hb_000069_160 Hb_000849_070 Hb_000849_070 Hb_002217_310--Hb_000849_070 Hb_002217_310--Hb_001124_210 Hb_021409_020 Hb_021409_020 Hb_002217_310--Hb_021409_020 Hb_002217_310--Hb_003847_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.0314 8.60148 7.10274 18.0568 27.1359 44.4323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9146 32.6517 20.6767 9.2272 5.35173

CAGE analysis