Hb_141194_010

Information

Type -
Description -
Location Contig141194: 12887-18852
Sequence    

Annotation

kegg
ID mdm:103407394
description protein ZINC INDUCED FACILITATOR 1-like
nr
ID XP_011041314.1
description PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A061EVN0
description Zinc induced facilitator-like 1 isoform 3 OS=Theobroma cacao GN=TCM_023670 PE=4 SV=1
Gene Ontology
ID GO:0016021
description zinc induced facilitator-like 1 isoform 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11145: 18536-30724
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141194_010 0.0 - - PREDICTED: protein ZINC INDUCED FACILITATOR 1-like isoform X2 [Populus euphratica]
2 Hb_000045_210 0.1179853321 - - -
3 Hb_034482_040 0.1435301934 - - aspartate kinase, partial [Francisella tularensis]
4 Hb_003007_010 0.144328658 - - PREDICTED: probable peptide/nitrate transporter At3g43790 isoform X1 [Populus euphratica]
5 Hb_003226_240 0.1531146816 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
6 Hb_001143_070 0.1559356842 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
7 Hb_000592_060 0.1570946995 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
8 Hb_001433_100 0.1592307003 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
9 Hb_002989_040 0.1685104942 - - hypothetical protein 1 [Hevea brasiliensis]
10 Hb_007426_050 0.1768728331 transcription factor TF Family: Tify JAZ8 [Hevea brasiliensis]
11 Hb_027892_040 0.1781656116 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
12 Hb_002704_050 0.1812274858 - - cysteine-type peptidase, putative [Ricinus communis]
13 Hb_029879_090 0.1824137308 - - PREDICTED: serine/threonine-protein kinase At3g07070 [Jatropha curcas]
14 Hb_003913_050 0.1855834473 - - 60S ribosomal protein L27B [Hevea brasiliensis]
15 Hb_032202_250 0.1857589887 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
16 Hb_012053_040 0.1883036385 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
17 Hb_001425_070 0.189415269 - - -
18 Hb_000920_320 0.1896761502 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
19 Hb_044653_060 0.19029906 - - PREDICTED: uncharacterized protein LOC105628750 [Jatropha curcas]
20 Hb_000103_550 0.1919087569 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_141194_010 Hb_141194_010 Hb_000045_210 Hb_000045_210 Hb_141194_010--Hb_000045_210 Hb_034482_040 Hb_034482_040 Hb_141194_010--Hb_034482_040 Hb_003007_010 Hb_003007_010 Hb_141194_010--Hb_003007_010 Hb_003226_240 Hb_003226_240 Hb_141194_010--Hb_003226_240 Hb_001143_070 Hb_001143_070 Hb_141194_010--Hb_001143_070 Hb_000592_060 Hb_000592_060 Hb_141194_010--Hb_000592_060 Hb_044653_060 Hb_044653_060 Hb_000045_210--Hb_044653_060 Hb_027892_040 Hb_027892_040 Hb_000045_210--Hb_027892_040 Hb_001266_030 Hb_001266_030 Hb_000045_210--Hb_001266_030 Hb_012053_010 Hb_012053_010 Hb_000045_210--Hb_012053_010 Hb_000431_160 Hb_000431_160 Hb_000045_210--Hb_000431_160 Hb_002989_040 Hb_002989_040 Hb_034482_040--Hb_002989_040 Hb_034482_040--Hb_003226_240 Hb_001433_100 Hb_001433_100 Hb_034482_040--Hb_001433_100 Hb_023051_020 Hb_023051_020 Hb_034482_040--Hb_023051_020 Hb_032202_250 Hb_032202_250 Hb_034482_040--Hb_032202_250 Hb_000483_090 Hb_000483_090 Hb_003007_010--Hb_000483_090 Hb_003007_010--Hb_000045_210 Hb_116420_020 Hb_116420_020 Hb_003007_010--Hb_116420_020 Hb_007254_080 Hb_007254_080 Hb_003007_010--Hb_007254_080 Hb_003007_010--Hb_000592_060 Hb_003226_240--Hb_002989_040 Hb_003226_240--Hb_001433_100 Hb_003226_240--Hb_023051_020 Hb_000920_320 Hb_000920_320 Hb_003226_240--Hb_000920_320 Hb_003226_240--Hb_032202_250 Hb_001143_070--Hb_002989_040 Hb_000103_030 Hb_000103_030 Hb_001143_070--Hb_000103_030 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_002290_050 Hb_002290_050 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_002704_050 Hb_002704_050 Hb_000592_060--Hb_002704_050 Hb_000592_060--Hb_000431_160 Hb_000318_490 Hb_000318_490 Hb_000592_060--Hb_000318_490 Hb_000103_550 Hb_000103_550 Hb_000592_060--Hb_000103_550 Hb_000281_230 Hb_000281_230 Hb_000592_060--Hb_000281_230 Hb_004545_130 Hb_004545_130 Hb_000592_060--Hb_004545_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.882185 0.358413 3.01282 4.97288 0.159538 0.697248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.9372 125.277 45.328 5.62586 3.67313

CAGE analysis