Hb_141199_010

Information

Type -
Description -
Location Contig141199: 11081-17029
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141199_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_005181_020 0.0400370413 - - Pectinesterase-2 precursor, putative [Ricinus communis]
3 Hb_007416_380 0.1136368976 - - PREDICTED: fasciclin-like arabinogalactan protein 3 [Jatropha curcas]
4 Hb_000069_390 0.1366540704 - - PREDICTED: probable F-box protein At3g61730 [Jatropha curcas]
5 Hb_000574_520 0.1549703594 - - PREDICTED: uncharacterized protein LOC105634842 isoform X1 [Jatropha curcas]
6 Hb_007904_050 0.175796702 - - hypothetical protein JCGZ_17883 [Jatropha curcas]
7 Hb_183612_020 0.1983365835 - - PREDICTED: small heat shock protein, chloroplastic-like [Nelumbo nucifera]
8 Hb_002450_150 0.2153512142 - - ATP binding protein, putative [Ricinus communis]
9 Hb_115823_010 0.2176253672 - - conserved hypothetical protein [Ricinus communis]
10 Hb_027402_030 0.2289348138 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
11 Hb_000107_670 0.2460665009 transcription factor TF Family: MIKC floral homeotic protein AGAMOUS [Jatropha curcas]
12 Hb_101393_010 0.2615349177 - - conserved hypothetical protein [Ricinus communis]
13 Hb_059295_010 0.2622013591 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
14 Hb_000429_210 0.2700419511 transcription factor TF Family: ERF hypothetical protein RCOM_0089590 [Ricinus communis]
15 Hb_002942_170 0.2744788945 - - acyl carrier protein, putative [Ricinus communis]
16 Hb_008147_110 0.2784450443 - - PREDICTED: phenolic glucoside malonyltransferase 1-like [Jatropha curcas]
17 Hb_105478_010 0.2795374126 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
18 Hb_011224_090 0.2796610888 - - PREDICTED: ABC transporter G family member 26 [Jatropha curcas]
19 Hb_001829_030 0.2812426096 - - PREDICTED: uncharacterized protein LOC105119087 [Populus euphratica]
20 Hb_004449_160 0.2847097907 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_141199_010 Hb_141199_010 Hb_005181_020 Hb_005181_020 Hb_141199_010--Hb_005181_020 Hb_007416_380 Hb_007416_380 Hb_141199_010--Hb_007416_380 Hb_000069_390 Hb_000069_390 Hb_141199_010--Hb_000069_390 Hb_000574_520 Hb_000574_520 Hb_141199_010--Hb_000574_520 Hb_007904_050 Hb_007904_050 Hb_141199_010--Hb_007904_050 Hb_183612_020 Hb_183612_020 Hb_141199_010--Hb_183612_020 Hb_005181_020--Hb_007416_380 Hb_005181_020--Hb_007904_050 Hb_005181_020--Hb_000069_390 Hb_005181_020--Hb_000574_520 Hb_115823_010 Hb_115823_010 Hb_005181_020--Hb_115823_010 Hb_007416_380--Hb_000069_390 Hb_007416_380--Hb_000574_520 Hb_007416_380--Hb_183612_020 Hb_002450_150 Hb_002450_150 Hb_007416_380--Hb_002450_150 Hb_000069_390--Hb_000574_520 Hb_004449_160 Hb_004449_160 Hb_000069_390--Hb_004449_160 Hb_000069_390--Hb_002450_150 Hb_000574_520--Hb_183612_020 Hb_000574_520--Hb_002450_150 Hb_007904_050--Hb_115823_010 Hb_022425_020 Hb_022425_020 Hb_007904_050--Hb_022425_020 Hb_002942_170 Hb_002942_170 Hb_007904_050--Hb_002942_170 Hb_173638_010 Hb_173638_010 Hb_007904_050--Hb_173638_010 Hb_183612_020--Hb_002450_150 Hb_059295_010 Hb_059295_010 Hb_183612_020--Hb_059295_010 Hb_001829_030 Hb_001829_030 Hb_183612_020--Hb_001829_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0152316 0.00335148 0 0.00427143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis