Hb_141532_010

Information

Type -
Description -
Location Contig141532: 331-1948
Sequence    

Annotation

kegg
ID pvu:PHAVU_002G039600g
description hypothetical protein
nr
ID XP_012090912.1
description PREDICTED: protein SMG9-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JD58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00558 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141532_010 0.0 - - PREDICTED: protein SMG9-like [Jatropha curcas]
2 Hb_000175_090 0.0812482047 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002292_010 0.0820623324 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
4 Hb_001142_050 0.0978723898 - - PREDICTED: coiled-coil domain-containing protein 12 [Jatropha curcas]
5 Hb_004363_010 0.1012312157 - - hypothetical protein CISIN_1g0405721mg, partial [Citrus sinensis]
6 Hb_005565_040 0.1018321623 - - conserved hypothetical protein [Ricinus communis]
7 Hb_007007_050 0.1022963207 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
8 Hb_017259_010 0.1039040582 - - -
9 Hb_000394_190 0.1063292324 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
10 Hb_011848_010 0.1068519933 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
11 Hb_000261_250 0.1080472747 - - elongation factor 1-alpha [Lepidium sativum]
12 Hb_012114_060 0.1082882274 - - PREDICTED: uncharacterized protein LOC105645814 [Jatropha curcas]
13 Hb_000785_030 0.1107885618 - - hypothetical protein RCOM_0808030 [Ricinus communis]
14 Hb_002530_010 0.1135804552 - - hypothetical protein EUGRSUZ_C02580 [Eucalyptus grandis]
15 Hb_000787_170 0.11416866 - - hypothetical protein POPTR_0005s06400g [Populus trichocarpa]
16 Hb_003091_010 0.1144021458 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
17 Hb_000976_260 0.1150381619 - - -
18 Hb_000106_130 0.1151097943 - - unnamed protein product [Vitis vinifera]
19 Hb_001135_020 0.1151895656 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
20 Hb_001910_020 0.1163611818 - - PREDICTED: ubiquitin-associated domain-containing protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_141532_010 Hb_141532_010 Hb_000175_090 Hb_000175_090 Hb_141532_010--Hb_000175_090 Hb_002292_010 Hb_002292_010 Hb_141532_010--Hb_002292_010 Hb_001142_050 Hb_001142_050 Hb_141532_010--Hb_001142_050 Hb_004363_010 Hb_004363_010 Hb_141532_010--Hb_004363_010 Hb_005565_040 Hb_005565_040 Hb_141532_010--Hb_005565_040 Hb_007007_050 Hb_007007_050 Hb_141532_010--Hb_007007_050 Hb_000175_090--Hb_004363_010 Hb_000976_260 Hb_000976_260 Hb_000175_090--Hb_000976_260 Hb_012114_060 Hb_012114_060 Hb_000175_090--Hb_012114_060 Hb_000175_090--Hb_002292_010 Hb_000261_250 Hb_000261_250 Hb_000175_090--Hb_000261_250 Hb_002292_010--Hb_007007_050 Hb_002292_010--Hb_004363_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002639_150 Hb_002639_150 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_000012_020 Hb_000012_020 Hb_001142_050--Hb_000012_020 Hb_001142_050--Hb_000976_260 Hb_011848_010 Hb_011848_010 Hb_001142_050--Hb_011848_010 Hb_001142_050--Hb_000261_250 Hb_009222_010 Hb_009222_010 Hb_001142_050--Hb_009222_010 Hb_003467_010 Hb_003467_010 Hb_001142_050--Hb_003467_010 Hb_004363_010--Hb_000976_260 Hb_003050_200 Hb_003050_200 Hb_004363_010--Hb_003050_200 Hb_008112_040 Hb_008112_040 Hb_004363_010--Hb_008112_040 Hb_007441_210 Hb_007441_210 Hb_004363_010--Hb_007441_210 Hb_004363_010--Hb_007007_050 Hb_005565_040--Hb_012114_060 Hb_000092_100 Hb_000092_100 Hb_005565_040--Hb_000092_100 Hb_001105_010 Hb_001105_010 Hb_005565_040--Hb_001105_010 Hb_029920_050 Hb_029920_050 Hb_005565_040--Hb_029920_050 Hb_000548_050 Hb_000548_050 Hb_005565_040--Hb_000548_050 Hb_011942_080 Hb_011942_080 Hb_005565_040--Hb_011942_080 Hb_019962_030 Hb_019962_030 Hb_007007_050--Hb_019962_030 Hb_002687_140 Hb_002687_140 Hb_007007_050--Hb_002687_140 Hb_000808_250 Hb_000808_250 Hb_007007_050--Hb_000808_250 Hb_002784_050 Hb_002784_050 Hb_007007_050--Hb_002784_050 Hb_000359_330 Hb_000359_330 Hb_007007_050--Hb_000359_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8664 6.92142 8.0577 6.06781 9.66648 13.0365
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.8046 9.33716 3.41866 2.12258 1.0539

CAGE analysis