Hb_141547_010

Information

Type -
Description -
Location Contig141547: 2491-9097
Sequence    

Annotation

kegg
ID rcu:RCOM_0837820
description pattern formation protein, putative
nr
ID XP_012067704.1
description PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
swissprot
ID Q42510
description ARF guanine-nucleotide exchange factor GNOM OS=Arabidopsis thaliana GN=GN PE=1 SV=1
trembl
ID A0A067L230
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15650 PE=4 SV=1
Gene Ontology
ID GO:0005622
description arf guanine-nucleotide exchange factor gnom

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11170: 2514-3665 , PASA_asmbl_11171: 2707-3081 , PASA_asmbl_11172: 3715-9135
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141547_010 0.0 - - PREDICTED: ARF guanine-nucleotide exchange factor GNOM [Jatropha curcas]
2 Hb_000997_030 0.0824347157 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
3 Hb_000023_060 0.0832370986 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
4 Hb_001900_110 0.0843049473 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
5 Hb_002400_240 0.0870654269 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
6 Hb_006816_300 0.0872991584 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
7 Hb_002762_130 0.096935873 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
8 Hb_007849_020 0.1000932675 transcription factor TF Family: MYB cell division control protein, putative [Ricinus communis]
9 Hb_000158_100 0.1019016321 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000640_200 0.1046599892 - - hypothetical protein RCOM_1346600 [Ricinus communis]
11 Hb_007904_080 0.1047470158 - - hypothetical protein JCGZ_17880 [Jatropha curcas]
12 Hb_002471_210 0.1060190464 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
13 Hb_002105_080 0.1060482942 - - PREDICTED: leucine--tRNA ligase, cytoplasmic [Jatropha curcas]
14 Hb_000813_100 0.1082085445 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
15 Hb_001322_210 0.1087166758 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
16 Hb_117552_010 0.1105977204 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_017075_010 0.1109226459 transcription factor TF Family: SNF2 PREDICTED: putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1 [Jatropha curcas]
18 Hb_000780_220 0.1112623829 transcription factor TF Family: GRAS PREDICTED: scarecrow-like transcription factor PAT1 [Jatropha curcas]
19 Hb_056196_050 0.1123407428 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
20 Hb_006501_020 0.1127608763 - - PREDICTED: SNW/SKI-interacting protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_141547_010 Hb_141547_010 Hb_000997_030 Hb_000997_030 Hb_141547_010--Hb_000997_030 Hb_000023_060 Hb_000023_060 Hb_141547_010--Hb_000023_060 Hb_001900_110 Hb_001900_110 Hb_141547_010--Hb_001900_110 Hb_002400_240 Hb_002400_240 Hb_141547_010--Hb_002400_240 Hb_006816_300 Hb_006816_300 Hb_141547_010--Hb_006816_300 Hb_002762_130 Hb_002762_130 Hb_141547_010--Hb_002762_130 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000813_100 Hb_000813_100 Hb_000997_030--Hb_000813_100 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_029142_010 Hb_029142_010 Hb_000023_060--Hb_029142_010 Hb_007849_020 Hb_007849_020 Hb_000023_060--Hb_007849_020 Hb_000023_060--Hb_000107_040 Hb_000227_380 Hb_000227_380 Hb_000023_060--Hb_000227_380 Hb_042487_010 Hb_042487_010 Hb_000023_060--Hb_042487_010 Hb_000158_100 Hb_000158_100 Hb_001900_110--Hb_000158_100 Hb_001900_110--Hb_029142_010 Hb_001900_110--Hb_000997_030 Hb_001900_110--Hb_000023_060 Hb_000236_080 Hb_000236_080 Hb_001900_110--Hb_000236_080 Hb_001913_060 Hb_001913_060 Hb_002400_240--Hb_001913_060 Hb_002301_080 Hb_002301_080 Hb_002400_240--Hb_002301_080 Hb_116929_010 Hb_116929_010 Hb_002400_240--Hb_116929_010 Hb_030627_060 Hb_030627_060 Hb_002400_240--Hb_030627_060 Hb_117552_010 Hb_117552_010 Hb_002400_240--Hb_117552_010 Hb_005701_070 Hb_005701_070 Hb_002400_240--Hb_005701_070 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_000046_450 Hb_000046_450 Hb_006816_300--Hb_000046_450 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070 Hb_000162_020 Hb_000162_020 Hb_002762_130--Hb_000162_020 Hb_018133_050 Hb_018133_050 Hb_002762_130--Hb_018133_050 Hb_002762_130--Hb_034243_020 Hb_002762_130--Hb_000997_030 Hb_133047_010 Hb_133047_010 Hb_002762_130--Hb_133047_010 Hb_001493_040 Hb_001493_040 Hb_002762_130--Hb_001493_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2167 34.2668 5.64451 11.4956 28.0733 47.3339
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.07484 3.95153 17.7424 20.194 13.2153

CAGE analysis