Hb_141708_010

Information

Type -
Description -
Location Contig141708: 236-631
Sequence    

Annotation

kegg
ID eus:EUTSA_v10011731mg
description hypothetical protein
nr
ID XP_006393560.1
description hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
swissprot
ID P0CC91
description NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Manihot esculenta GN=ndhB2 PE=3 SV=1
trembl
ID V4MHP1
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10011731mg PE=4 SV=1
Gene Ontology
ID GO:0009535
description nadh dehydrogenase subunit 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141708_010 0.0 - - hypothetical protein EUTSA_v10011731mg [Eutrema salsugineum]
2 Hb_001674_050 0.0753162069 - - cytochrome b6 (chloroplast) [Apios americana]
3 Hb_001338_080 0.0989921974 - - NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Tamarindus indica]
4 Hb_182972_020 0.1248442588 - - cytochrome b6 [Gossypium barbadense]
5 Hb_000627_200 0.1273179308 - - NADH dehydrogenase subunit I [Hevea brasiliensis]
6 Hb_063885_010 0.1287852552 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
7 Hb_145745_010 0.1293746948 - - BnaUnng00830D [Brassica napus]
8 Hb_001610_100 0.1307628776 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
9 Hb_145745_020 0.1312862152 - - Cell wall-associated hydrolase, partial [Medicago truncatula]
10 Hb_000336_130 0.133484315 - - Triacylglycerol lipase 2 precursor, putative [Ricinus communis]
11 Hb_003693_030 0.1370111005 - - NADH dehydrogenase subunit 7 [Hevea brasiliensis]
12 Hb_000648_150 0.1420258014 - - PREDICTED: putative L-type lectin-domain containing receptor kinase V.1 [Camelina sativa]
13 Hb_151890_020 0.1424685949 - - photosystem II cp47 protein, partial (chloroplast) [Pentaphragma sp. Duangjai 49]
14 Hb_007645_060 0.1424952133 - - cytochrome f [Hevea brasiliensis]
15 Hb_171685_070 0.1437106838 - - -
16 Hb_115031_010 0.1484162866 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
17 Hb_001338_170 0.1488374332 - - NADH dehydrogenase subunit 4 [Hevea brasiliensis]
18 Hb_000832_050 0.1518121311 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
19 Hb_051924_010 0.1524852758 - - BnaA01g34100D [Brassica napus]
20 Hb_000156_240 0.1537516743 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]

Gene co-expression network

sample Hb_141708_010 Hb_141708_010 Hb_001674_050 Hb_001674_050 Hb_141708_010--Hb_001674_050 Hb_001338_080 Hb_001338_080 Hb_141708_010--Hb_001338_080 Hb_182972_020 Hb_182972_020 Hb_141708_010--Hb_182972_020 Hb_000627_200 Hb_000627_200 Hb_141708_010--Hb_000627_200 Hb_063885_010 Hb_063885_010 Hb_141708_010--Hb_063885_010 Hb_145745_010 Hb_145745_010 Hb_141708_010--Hb_145745_010 Hb_001674_050--Hb_001338_080 Hb_001674_050--Hb_063885_010 Hb_001674_050--Hb_182972_020 Hb_001083_040 Hb_001083_040 Hb_001674_050--Hb_001083_040 Hb_151890_020 Hb_151890_020 Hb_001674_050--Hb_151890_020 Hb_051924_010 Hb_051924_010 Hb_001338_080--Hb_051924_010 Hb_001338_080--Hb_182972_020 Hb_019253_040 Hb_019253_040 Hb_001338_080--Hb_019253_040 Hb_007645_060 Hb_007645_060 Hb_001338_080--Hb_007645_060 Hb_182972_020--Hb_000627_200 Hb_182972_020--Hb_007645_060 Hb_001645_020 Hb_001645_020 Hb_182972_020--Hb_001645_020 Hb_182972_020--Hb_151890_020 Hb_182972_020--Hb_051924_010 Hb_007645_050 Hb_007645_050 Hb_182972_020--Hb_007645_050 Hb_000627_200--Hb_007645_060 Hb_000627_200--Hb_001645_020 Hb_001338_170 Hb_001338_170 Hb_000627_200--Hb_001338_170 Hb_000627_200--Hb_051924_010 Hb_003693_030 Hb_003693_030 Hb_000627_200--Hb_003693_030 Hb_003947_020 Hb_003947_020 Hb_063885_010--Hb_003947_020 Hb_026188_010 Hb_026188_010 Hb_063885_010--Hb_026188_010 Hb_034168_060 Hb_034168_060 Hb_063885_010--Hb_034168_060 Hb_009095_020 Hb_009095_020 Hb_063885_010--Hb_009095_020 Hb_000336_130 Hb_000336_130 Hb_063885_010--Hb_000336_130 Hb_000696_200 Hb_000696_200 Hb_063885_010--Hb_000696_200 Hb_004138_020 Hb_004138_020 Hb_145745_010--Hb_004138_020 Hb_001081_070 Hb_001081_070 Hb_145745_010--Hb_001081_070 Hb_003477_020 Hb_003477_020 Hb_145745_010--Hb_003477_020 Hb_145745_010--Hb_009095_020 Hb_006331_010 Hb_006331_010 Hb_145745_010--Hb_006331_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.335686 0.440425 2.57781 4.74874 0.2484 2.2966
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.254617 0.274076 56.1862

CAGE analysis