Hb_141881_010

Information

Type -
Description -
Location Contig141881: 1220-1717
Sequence    

Annotation

kegg
ID rcu:RCOM_0342960
description cytochrome P450, putative (EC:1.14.13.76)
nr
ID XP_002523409.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID I7C6E8
description Beta-amyrin 28-oxidase OS=Panax ginseng PE=2 SV=1
trembl
ID B9SBP0
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_0342960 PE=3 SV=1
Gene Ontology
ID GO:0004497
description beta-amyrin 28-oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141881_010 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_002253_090 0.2859363878 - - Chitinase 1 precursor, putative [Ricinus communis]
3 Hb_012098_090 0.3230749426 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
4 Hb_000107_180 0.3253988893 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
5 Hb_000529_200 0.3292673354 - - -
6 Hb_016567_010 0.3545845484 - - -
7 Hb_000272_040 0.35479301 - - -
8 Hb_001411_040 0.3552037888 - - hypothetical protein VITISV_010644 [Vitis vinifera]
9 Hb_008315_010 0.3600551485 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
10 Hb_000523_110 0.363360009 - - PREDICTED: probable polyamine oxidase 4 [Jatropha curcas]
11 Hb_001401_080 0.3653549054 - - PREDICTED: protein TIC 22, chloroplastic [Jatropha curcas]
12 Hb_006869_010 0.3657995189 - - unnamed protein product [Coffea canephora]
13 Hb_011174_060 0.3670846815 - - -
14 Hb_002027_150 0.367096926 - - -
15 Hb_000442_110 0.3678884342 - - hypothetical protein POPTR_0010s18960g [Populus trichocarpa]
16 Hb_000116_070 0.3681274935 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
17 Hb_001405_140 0.3734891831 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
18 Hb_004994_370 0.3762100076 - - -
19 Hb_001427_030 0.3823515784 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006269_050 0.3848275273 - - hypothetical protein POPTR_0004s13450g [Populus trichocarpa]

Gene co-expression network

sample Hb_141881_010 Hb_141881_010 Hb_002253_090 Hb_002253_090 Hb_141881_010--Hb_002253_090 Hb_012098_090 Hb_012098_090 Hb_141881_010--Hb_012098_090 Hb_000107_180 Hb_000107_180 Hb_141881_010--Hb_000107_180 Hb_000529_200 Hb_000529_200 Hb_141881_010--Hb_000529_200 Hb_016567_010 Hb_016567_010 Hb_141881_010--Hb_016567_010 Hb_000272_040 Hb_000272_040 Hb_141881_010--Hb_000272_040 Hb_000116_070 Hb_000116_070 Hb_002253_090--Hb_000116_070 Hb_000347_050 Hb_000347_050 Hb_002253_090--Hb_000347_050 Hb_002253_090--Hb_000272_040 Hb_002253_090--Hb_000107_180 Hb_001411_040 Hb_001411_040 Hb_002253_090--Hb_001411_040 Hb_012098_090--Hb_001411_040 Hb_007254_030 Hb_007254_030 Hb_012098_090--Hb_007254_030 Hb_000099_140 Hb_000099_140 Hb_012098_090--Hb_000099_140 Hb_012098_090--Hb_000116_070 Hb_000416_030 Hb_000416_030 Hb_012098_090--Hb_000416_030 Hb_000608_430 Hb_000608_430 Hb_012098_090--Hb_000608_430 Hb_000094_030 Hb_000094_030 Hb_000107_180--Hb_000094_030 Hb_004917_030 Hb_004917_030 Hb_000107_180--Hb_004917_030 Hb_001405_140 Hb_001405_140 Hb_000107_180--Hb_001405_140 Hb_000107_180--Hb_000099_140 Hb_004088_050 Hb_004088_050 Hb_000107_180--Hb_004088_050 Hb_012506_060 Hb_012506_060 Hb_000529_200--Hb_012506_060 Hb_000162_120 Hb_000162_120 Hb_000529_200--Hb_000162_120 Hb_007416_050 Hb_007416_050 Hb_000529_200--Hb_007416_050 Hb_029866_120 Hb_029866_120 Hb_000529_200--Hb_029866_120 Hb_001427_030 Hb_001427_030 Hb_000529_200--Hb_001427_030 Hb_010812_040 Hb_010812_040 Hb_000529_200--Hb_010812_040 Hb_003497_040 Hb_003497_040 Hb_016567_010--Hb_003497_040 Hb_001056_030 Hb_001056_030 Hb_016567_010--Hb_001056_030 Hb_001401_080 Hb_001401_080 Hb_016567_010--Hb_001401_080 Hb_000008_360 Hb_000008_360 Hb_016567_010--Hb_000008_360 Hb_000105_050 Hb_000105_050 Hb_016567_010--Hb_000105_050 Hb_016567_010--Hb_029866_120 Hb_000272_040--Hb_000116_070 Hb_011139_050 Hb_011139_050 Hb_000272_040--Hb_011139_050 Hb_122273_010 Hb_122273_010 Hb_000272_040--Hb_122273_010 Hb_004125_120 Hb_004125_120 Hb_000272_040--Hb_004125_120 Hb_000272_040--Hb_016567_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.279426 0 0.0948727 0.21667 0.116369 0.159852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.636814 0 0 0.396479

CAGE analysis