Hb_141918_010

Information

Type -
Description -
Location Contig141918: 2967-4614
Sequence    

Annotation

kegg
ID rcu:RCOM_0265270
description S-locus-specific glycoprotein S13 precursor, putative (EC:2.7.10.2)
nr
ID XP_002530266.1
description S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
swissprot
ID Q9LPZ3
description G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410 OS=Arabidopsis thaliana GN=At1g11410 PE=3 SV=3
trembl
ID B9SW97
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0265270 PE=3 SV=1
Gene Ontology
ID GO:0004672
description s-locus-specific glycoprotein s13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141918_010 0.0 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
2 Hb_010487_020 0.1190565858 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
3 Hb_010727_010 0.159729207 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
4 Hb_003060_090 0.1609480773 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
5 Hb_000905_170 0.1617814333 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
6 Hb_001123_290 0.1706121786 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3 [Jatropha curcas]
7 Hb_000227_060 0.1716006755 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
8 Hb_063480_020 0.1772356965 - - unnamed protein product [Vitis vinifera]
9 Hb_000735_160 0.1784707356 - - PREDICTED: uncharacterized protein LOC105644513 [Jatropha curcas]
10 Hb_014231_010 0.1795169863 - - PREDICTED: tRNA (cytosine(34)-C(5))-methyltransferase [Jatropha curcas]
11 Hb_008511_100 0.1803226827 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]
12 Hb_042175_010 0.1807825337 - - hypothetical protein CISIN_1g0016721mg, partial [Citrus sinensis]
13 Hb_011930_070 0.1843656543 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
14 Hb_006185_020 0.1878977673 - - PREDICTED: midasin [Jatropha curcas]
15 Hb_004371_010 0.1881043875 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
16 Hb_011512_120 0.188536773 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
17 Hb_081745_010 0.1899299011 - - hypothetical protein CISIN_1g030953mg [Citrus sinensis]
18 Hb_001183_010 0.19025962 - - -
19 Hb_003125_020 0.1910853069 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
20 Hb_000175_220 0.1916671429 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]

Gene co-expression network

sample Hb_141918_010 Hb_141918_010 Hb_010487_020 Hb_010487_020 Hb_141918_010--Hb_010487_020 Hb_010727_010 Hb_010727_010 Hb_141918_010--Hb_010727_010 Hb_003060_090 Hb_003060_090 Hb_141918_010--Hb_003060_090 Hb_000905_170 Hb_000905_170 Hb_141918_010--Hb_000905_170 Hb_001123_290 Hb_001123_290 Hb_141918_010--Hb_001123_290 Hb_000227_060 Hb_000227_060 Hb_141918_010--Hb_000227_060 Hb_000735_160 Hb_000735_160 Hb_010487_020--Hb_000735_160 Hb_013399_070 Hb_013399_070 Hb_010487_020--Hb_013399_070 Hb_001080_230 Hb_001080_230 Hb_010487_020--Hb_001080_230 Hb_004371_010 Hb_004371_010 Hb_010487_020--Hb_004371_010 Hb_001821_090 Hb_001821_090 Hb_010487_020--Hb_001821_090 Hb_004483_040 Hb_004483_040 Hb_010487_020--Hb_004483_040 Hb_001183_010 Hb_001183_010 Hb_010727_010--Hb_001183_010 Hb_000025_340 Hb_000025_340 Hb_010727_010--Hb_000025_340 Hb_081745_010 Hb_081745_010 Hb_010727_010--Hb_081745_010 Hb_000087_050 Hb_000087_050 Hb_010727_010--Hb_000087_050 Hb_002272_080 Hb_002272_080 Hb_010727_010--Hb_002272_080 Hb_144744_010 Hb_144744_010 Hb_003060_090--Hb_144744_010 Hb_014834_060 Hb_014834_060 Hb_003060_090--Hb_014834_060 Hb_000123_350 Hb_000123_350 Hb_003060_090--Hb_000123_350 Hb_011828_030 Hb_011828_030 Hb_003060_090--Hb_011828_030 Hb_004032_040 Hb_004032_040 Hb_003060_090--Hb_004032_040 Hb_000189_100 Hb_000189_100 Hb_003060_090--Hb_000189_100 Hb_000905_170--Hb_000227_060 Hb_049436_010 Hb_049436_010 Hb_000905_170--Hb_049436_010 Hb_000856_180 Hb_000856_180 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330 Hb_116086_010 Hb_116086_010 Hb_001123_290--Hb_116086_010 Hb_000175_220 Hb_000175_220 Hb_001123_290--Hb_000175_220 Hb_000322_150 Hb_000322_150 Hb_001123_290--Hb_000322_150 Hb_000832_030 Hb_000832_030 Hb_001123_290--Hb_000832_030 Hb_001864_060 Hb_001864_060 Hb_001123_290--Hb_001864_060 Hb_002005_110 Hb_002005_110 Hb_001123_290--Hb_002005_110 Hb_000200_280 Hb_000200_280 Hb_000227_060--Hb_000200_280 Hb_000390_100 Hb_000390_100 Hb_000227_060--Hb_000390_100 Hb_000227_060--Hb_049436_010 Hb_001514_130 Hb_001514_130 Hb_000227_060--Hb_001514_130 Hb_000227_060--Hb_000856_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.33093 4.00553 0.540386 0.326354 0.353788 2.25642
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.829088 1.03217 0.882953 2.35423 0.870839

CAGE analysis