Hb_141939_010

Information

Type -
Description -
Location Contig141939: 699-2517
Sequence    

Annotation

kegg
ID rcu:RCOM_1039450
description hypothetical protein
nr
ID XP_012068009.1
description PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]
swissprot
ID Q8L7W1
description Mechanosensitive ion channel protein 3, chloroplastic OS=Arabidopsis thaliana GN=MSL3 PE=1 SV=1
trembl
ID A0A067LAE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15887 PE=4 SV=1
Gene Ontology
ID GO:0044763
description mechanosensitive ion channel protein chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141939_010 0.0 - - PREDICTED: mechanosensitive ion channel protein 3, chloroplastic-like isoform X1 [Jatropha curcas]
2 Hb_003106_010 0.1149260422 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
3 Hb_000836_630 0.1167150603 - - PREDICTED: WD repeat-containing protein 44 [Jatropha curcas]
4 Hb_000034_140 0.118134416 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic-like isoform X3 [Jatropha curcas]
5 Hb_011287_090 0.136765794 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
6 Hb_007064_040 0.1417735759 - - hypothetical protein RCOM_0254640 [Ricinus communis]
7 Hb_000139_380 0.1537178923 - - conserved hypothetical protein [Ricinus communis]
8 Hb_024973_010 0.1572246414 - - PREDICTED: uncharacterized protein LOC105642097 isoform X2 [Jatropha curcas]
9 Hb_000761_020 0.1591468846 - - PREDICTED: uncharacterized protein LOC105638198 [Jatropha curcas]
10 Hb_005280_010 0.1616207326 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
11 Hb_008453_150 0.1620086458 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
12 Hb_188279_010 0.1629342578 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
13 Hb_005754_060 0.1656392294 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002874_070 0.1662145218 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
15 Hb_057183_040 0.1664128888 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
16 Hb_127003_010 0.1665481341 - - PREDICTED: uncharacterized protein LOC105633613 [Jatropha curcas]
17 Hb_001855_010 0.167056036 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
18 Hb_001140_200 0.1671169969 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
19 Hb_011639_050 0.1675386102 - - conserved hypothetical protein [Ricinus communis]
20 Hb_185467_010 0.1693490365 - - -

Gene co-expression network

sample Hb_141939_010 Hb_141939_010 Hb_003106_010 Hb_003106_010 Hb_141939_010--Hb_003106_010 Hb_000836_630 Hb_000836_630 Hb_141939_010--Hb_000836_630 Hb_000034_140 Hb_000034_140 Hb_141939_010--Hb_000034_140 Hb_011287_090 Hb_011287_090 Hb_141939_010--Hb_011287_090 Hb_007064_040 Hb_007064_040 Hb_141939_010--Hb_007064_040 Hb_000139_380 Hb_000139_380 Hb_141939_010--Hb_000139_380 Hb_003106_010--Hb_007064_040 Hb_003106_010--Hb_000836_630 Hb_011639_050 Hb_011639_050 Hb_003106_010--Hb_011639_050 Hb_003106_010--Hb_011287_090 Hb_001946_280 Hb_001946_280 Hb_003106_010--Hb_001946_280 Hb_000836_630--Hb_007064_040 Hb_000761_020 Hb_000761_020 Hb_000836_630--Hb_000761_020 Hb_009048_040 Hb_009048_040 Hb_000836_630--Hb_009048_040 Hb_003609_040 Hb_003609_040 Hb_000836_630--Hb_003609_040 Hb_005754_060 Hb_005754_060 Hb_000836_630--Hb_005754_060 Hb_002874_070 Hb_002874_070 Hb_000836_630--Hb_002874_070 Hb_000034_140--Hb_000836_630 Hb_000034_140--Hb_000761_020 Hb_031042_040 Hb_031042_040 Hb_000034_140--Hb_031042_040 Hb_000001_020 Hb_000001_020 Hb_000034_140--Hb_000001_020 Hb_000329_390 Hb_000329_390 Hb_000034_140--Hb_000329_390 Hb_000049_070 Hb_000049_070 Hb_011287_090--Hb_000049_070 Hb_011287_090--Hb_002874_070 Hb_000077_130 Hb_000077_130 Hb_011287_090--Hb_000077_130 Hb_011287_090--Hb_000139_380 Hb_000236_250 Hb_000236_250 Hb_011287_090--Hb_000236_250 Hb_006935_050 Hb_006935_050 Hb_011287_090--Hb_006935_050 Hb_007064_040--Hb_000761_020 Hb_001100_050 Hb_001100_050 Hb_007064_040--Hb_001100_050 Hb_006816_390 Hb_006816_390 Hb_007064_040--Hb_006816_390 Hb_000699_140 Hb_000699_140 Hb_007064_040--Hb_000699_140 Hb_116349_160 Hb_116349_160 Hb_007064_040--Hb_116349_160 Hb_000139_380--Hb_006935_050 Hb_098993_010 Hb_098993_010 Hb_000139_380--Hb_098993_010 Hb_000025_480 Hb_000025_480 Hb_000139_380--Hb_000025_480 Hb_000080_190 Hb_000080_190 Hb_000139_380--Hb_000080_190 Hb_005280_010 Hb_005280_010 Hb_000139_380--Hb_005280_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.1377 0.454358 6.11243 2.92655 9.82039 16.7239
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.05864 4.27449 17.7859 2.2114 3.48809

CAGE analysis