Hb_141990_040

Information

Type -
Description -
Location Contig141990: 33677-44382
Sequence    

Annotation

kegg
ID rcu:RCOM_0850090
description Protein SCAR2, putative
nr
ID XP_002526707.1
description Protein SCAR2, putative [Ricinus communis]
swissprot
ID Q5XPJ9
description Protein SCAR2 OS=Arabidopsis thaliana GN=SCAR2 PE=1 SV=1
trembl
ID B9SL38
description Protein SCAR2, putative OS=Ricinus communis GN=RCOM_0850090 PE=4 SV=1
Gene Ontology
ID GO:0044424
description protein scar2 isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11222: 40470-40918 , PASA_asmbl_11224: 41939-44276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_141990_040 0.0 - - Protein SCAR2, putative [Ricinus communis]
2 Hb_001825_060 0.1130988607 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
3 Hb_000009_450 0.1155432656 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Jatropha curcas]
4 Hb_001856_200 0.1200807229 - - Esterase PIR7B, putative [Ricinus communis]
5 Hb_012573_040 0.1205716924 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
6 Hb_000304_030 0.1312184402 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
7 Hb_000549_040 0.1409584073 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
8 Hb_000987_060 0.1447909456 - - PREDICTED: BRCA1-A complex subunit Abraxas [Jatropha curcas]
9 Hb_012107_060 0.147789086 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
10 Hb_000033_020 0.1511619786 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_002097_200 0.1523784017 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
12 Hb_003929_130 0.1524874362 - - PREDICTED: uncharacterized protein LOC105643628 [Jatropha curcas]
13 Hb_003777_050 0.1543654402 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
14 Hb_002701_220 0.1564553639 - - PREDICTED: solute carrier family 25 member 44 [Jatropha curcas]
15 Hb_002217_020 0.1566519537 - - PREDICTED: uncharacterized protein LOC105643601 isoform X1 [Jatropha curcas]
16 Hb_000398_100 0.1576238716 - - Uncharacterized protein isoform 2 [Theobroma cacao]
17 Hb_001648_030 0.1579183934 - - PREDICTED: uncharacterized protein LOC105628931 isoform X2 [Jatropha curcas]
18 Hb_000007_140 0.1600073195 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570 [Jatropha curcas]
19 Hb_000392_310 0.1601137652 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001473_040 0.1613142566 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_141990_040 Hb_141990_040 Hb_001825_060 Hb_001825_060 Hb_141990_040--Hb_001825_060 Hb_000009_450 Hb_000009_450 Hb_141990_040--Hb_000009_450 Hb_001856_200 Hb_001856_200 Hb_141990_040--Hb_001856_200 Hb_012573_040 Hb_012573_040 Hb_141990_040--Hb_012573_040 Hb_000304_030 Hb_000304_030 Hb_141990_040--Hb_000304_030 Hb_000549_040 Hb_000549_040 Hb_141990_040--Hb_000549_040 Hb_001825_060--Hb_001856_200 Hb_002217_020 Hb_002217_020 Hb_001825_060--Hb_002217_020 Hb_001825_060--Hb_012573_040 Hb_012107_060 Hb_012107_060 Hb_001825_060--Hb_012107_060 Hb_000465_230 Hb_000465_230 Hb_001825_060--Hb_000465_230 Hb_004375_150 Hb_004375_150 Hb_000009_450--Hb_004375_150 Hb_000117_090 Hb_000117_090 Hb_000009_450--Hb_000117_090 Hb_000033_020 Hb_000033_020 Hb_000009_450--Hb_000033_020 Hb_012760_070 Hb_012760_070 Hb_000009_450--Hb_012760_070 Hb_008566_050 Hb_008566_050 Hb_000009_450--Hb_008566_050 Hb_001856_200--Hb_002217_020 Hb_000987_060 Hb_000987_060 Hb_001856_200--Hb_000987_060 Hb_000210_010 Hb_000210_010 Hb_001856_200--Hb_000210_010 Hb_001856_200--Hb_000009_450 Hb_000398_100 Hb_000398_100 Hb_012573_040--Hb_000398_100 Hb_000173_470 Hb_000173_470 Hb_012573_040--Hb_000173_470 Hb_000951_130 Hb_000951_130 Hb_012573_040--Hb_000951_130 Hb_000270_120 Hb_000270_120 Hb_012573_040--Hb_000270_120 Hb_004916_010 Hb_004916_010 Hb_012573_040--Hb_004916_010 Hb_000009_050 Hb_000009_050 Hb_000304_030--Hb_000009_050 Hb_000009_180 Hb_000009_180 Hb_000304_030--Hb_000009_180 Hb_000225_060 Hb_000225_060 Hb_000304_030--Hb_000225_060 Hb_000465_300 Hb_000465_300 Hb_000304_030--Hb_000465_300 Hb_001341_100 Hb_001341_100 Hb_000304_030--Hb_001341_100 Hb_031910_020 Hb_031910_020 Hb_000549_040--Hb_031910_020 Hb_004117_260 Hb_004117_260 Hb_000549_040--Hb_004117_260 Hb_004993_060 Hb_004993_060 Hb_000549_040--Hb_004993_060 Hb_000367_260 Hb_000367_260 Hb_000549_040--Hb_000367_260 Hb_001314_070 Hb_001314_070 Hb_000549_040--Hb_001314_070 Hb_005228_070 Hb_005228_070 Hb_000549_040--Hb_005228_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24488 19.6064 6.85434 6.04607 5.3252 3.13287
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66546 17.7805 18.4416 7.55029 5.77733

CAGE analysis