Hb_142068_020

Information

Type -
Description -
Location Contig142068: 9354-13236
Sequence    

Annotation

kegg
ID rcu:RCOM_1592330
description signal peptidase I, putative (EC:3.4.21.89)
nr
ID XP_012071721.1
description PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
swissprot
ID O04348
description Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2
trembl
ID A0A067L1P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04335 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142068_020 0.0 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
2 Hb_000454_020 0.001182729 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_000656_130 0.0078858355 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
4 Hb_049014_010 0.0833036877 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_075481_010 0.1171533652 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
6 Hb_122567_010 0.1586072071 - - -
7 Hb_187661_010 0.1598786973 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
8 Hb_005671_030 0.1665482063 - - -
9 Hb_008891_020 0.2084400108 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
10 Hb_056305_010 0.2085185962 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_002257_070 0.2088538832 - - hypothetical protein, partial [Pseudomonas fluorescens]
12 Hb_003017_010 0.2098140587 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]
13 Hb_003985_020 0.2124779093 - - -
14 Hb_012587_010 0.2163585762 - - -
15 Hb_066620_010 0.2239088063 - - hypothetical protein JCGZ_08269 [Jatropha curcas]
16 Hb_044767_010 0.2267308285 - - -
17 Hb_001887_030 0.2297089329 - - -
18 Hb_178389_010 0.2348916892 - - PREDICTED: U-box domain-containing protein 15-like isoform X2 [Jatropha curcas]
19 Hb_001676_030 0.2356199626 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000934_220 0.249238167 - - PREDICTED: uncharacterized protein LOC104890722 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_142068_020 Hb_142068_020 Hb_000454_020 Hb_000454_020 Hb_142068_020--Hb_000454_020 Hb_000656_130 Hb_000656_130 Hb_142068_020--Hb_000656_130 Hb_049014_010 Hb_049014_010 Hb_142068_020--Hb_049014_010 Hb_075481_010 Hb_075481_010 Hb_142068_020--Hb_075481_010 Hb_122567_010 Hb_122567_010 Hb_142068_020--Hb_122567_010 Hb_187661_010 Hb_187661_010 Hb_142068_020--Hb_187661_010 Hb_000454_020--Hb_000656_130 Hb_000454_020--Hb_049014_010 Hb_000454_020--Hb_075481_010 Hb_000454_020--Hb_122567_010 Hb_000454_020--Hb_187661_010 Hb_000656_130--Hb_049014_010 Hb_000656_130--Hb_075481_010 Hb_000656_130--Hb_122567_010 Hb_000656_130--Hb_187661_010 Hb_049014_010--Hb_075481_010 Hb_049014_010--Hb_122567_010 Hb_005671_030 Hb_005671_030 Hb_049014_010--Hb_005671_030 Hb_075481_010--Hb_122567_010 Hb_002498_200 Hb_002498_200 Hb_075481_010--Hb_002498_200 Hb_178389_010 Hb_178389_010 Hb_122567_010--Hb_178389_010 Hb_008891_020 Hb_008891_020 Hb_187661_010--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_187661_010--Hb_056305_010 Hb_002257_070 Hb_002257_070 Hb_187661_010--Hb_002257_070 Hb_003017_010 Hb_003017_010 Hb_187661_010--Hb_003017_010 Hb_003985_020 Hb_003985_020 Hb_187661_010--Hb_003985_020 Hb_012587_010 Hb_012587_010 Hb_187661_010--Hb_012587_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175387 0 0 0 0 0.0535591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis