Hb_142218_020

Information

Type -
Description -
Location Contig142218: 19380-21461
Sequence    

Annotation

kegg
ID pop:POPTR_0001s31700g
description POPTRDRAFT_813612; actin family protein
nr
ID XP_002298710.1
description actin family protein [Populus trichocarpa]
swissprot
ID P53492
description Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1
trembl
ID A0A0A0YMU1
description Actin OS=Panax notoginseng GN=act1 PE=2 SV=1
Gene Ontology
ID GO:0005618
description actin

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11264: 18378-21414
cDNA
(Sanger)
(ID:Location)		 001_G01.ab1: 18378-20289 , 011_G14.ab1: 18378-20330 , 012_F04.ab1: 18378-20261 , 016_P12.ab1: 21173-21414 , 018_E11.ab1: 18378-20123

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142218_020 0.0 - - actin family protein [Populus trichocarpa]
2 Hb_009083_070 0.0733237052 - - PREDICTED: uncharacterized protein LOC105639870 [Jatropha curcas]
3 Hb_007380_140 0.0777379977 - - PREDICTED: probable galacturonosyltransferase 4 isoform X2 [Jatropha curcas]
4 Hb_002686_040 0.0820997944 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
5 Hb_005137_040 0.0834420414 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
6 Hb_005918_010 0.0875475236 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
7 Hb_004129_070 0.0875882547 - - PREDICTED: conserved oligomeric Golgi complex subunit 5 [Jatropha curcas]
8 Hb_000617_100 0.0881952961 - - PREDICTED: uncharacterized protein LOC105647493 [Jatropha curcas]
9 Hb_003640_040 0.0886367915 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
10 Hb_005723_020 0.0909077634 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001221_080 0.092503603 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
12 Hb_012506_030 0.0927179033 - - AP-2 complex subunit alpha, putative [Ricinus communis]
13 Hb_000322_070 0.0930018603 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
14 Hb_000270_520 0.0932213597 - - PREDICTED: alpha-N-acetylglucosaminidase-like isoform X1 [Jatropha curcas]
15 Hb_140049_080 0.0936686756 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
16 Hb_000680_090 0.0946552462 - - Protein SEY1, putative [Ricinus communis]
17 Hb_001135_120 0.0946605482 - - PREDICTED: TBC1 domain family member 10B-like isoform X1 [Jatropha curcas]
18 Hb_002909_140 0.0951054392 - - PREDICTED: D-xylose-proton symporter-like 2 [Jatropha curcas]
19 Hb_184798_080 0.0957770558 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
20 Hb_103747_020 0.0958184543 - - calcium dependent protein kinase, partial [Hevea brasiliensis]

Gene co-expression network

sample Hb_142218_020 Hb_142218_020 Hb_009083_070 Hb_009083_070 Hb_142218_020--Hb_009083_070 Hb_007380_140 Hb_007380_140 Hb_142218_020--Hb_007380_140 Hb_002686_040 Hb_002686_040 Hb_142218_020--Hb_002686_040 Hb_005137_040 Hb_005137_040 Hb_142218_020--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_142218_020--Hb_005918_010 Hb_004129_070 Hb_004129_070 Hb_142218_020--Hb_004129_070 Hb_002276_240 Hb_002276_240 Hb_009083_070--Hb_002276_240 Hb_184798_080 Hb_184798_080 Hb_009083_070--Hb_184798_080 Hb_009083_070--Hb_004129_070 Hb_001135_120 Hb_001135_120 Hb_009083_070--Hb_001135_120 Hb_002046_110 Hb_002046_110 Hb_009083_070--Hb_002046_110 Hb_009083_070--Hb_005918_010 Hb_007380_140--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_007380_140--Hb_005723_020 Hb_010272_010 Hb_010272_010 Hb_007380_140--Hb_010272_010 Hb_005946_210 Hb_005946_210 Hb_007380_140--Hb_005946_210 Hb_158604_010 Hb_158604_010 Hb_007380_140--Hb_158604_010 Hb_103747_020 Hb_103747_020 Hb_002686_040--Hb_103747_020 Hb_006618_090 Hb_006618_090 Hb_002686_040--Hb_006618_090 Hb_002686_040--Hb_005723_020 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080 Hb_005137_040--Hb_005918_010 Hb_000637_110 Hb_000637_110 Hb_005137_040--Hb_000637_110 Hb_012506_030 Hb_012506_030 Hb_005137_040--Hb_012506_030 Hb_105105_010 Hb_105105_010 Hb_005137_040--Hb_105105_010 Hb_000088_170 Hb_000088_170 Hb_005137_040--Hb_000088_170 Hb_000441_220 Hb_000441_220 Hb_005137_040--Hb_000441_220 Hb_005918_010--Hb_012506_030 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_005918_010--Hb_105105_010 Hb_005918_010--Hb_000441_220 Hb_004129_070--Hb_000174_060 Hb_004129_070--Hb_002276_240 Hb_008253_020 Hb_008253_020 Hb_004129_070--Hb_008253_020 Hb_006615_120 Hb_006615_120 Hb_004129_070--Hb_006615_120 Hb_001033_050 Hb_001033_050 Hb_004129_070--Hb_001033_050 Hb_004129_070--Hb_001135_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
240.783 302.893 299.523 394.903 316.145 323.694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
156.396 118.022 281.701 300.358 170.95

CAGE analysis