Hb_142328_010

Information

Type -
Description -
Location Contig142328: 127-666
Sequence    

Annotation

kegg
ID rcu:RCOM_1621770
description DNA binding protein, putative
nr
ID XP_012067733.1
description PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KYQ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15674 PE=4 SV=1
Gene Ontology
ID GO:0003677
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142328_010 0.0 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
2 Hb_002079_050 0.0903939754 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
3 Hb_002079_030 0.1030886895 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
4 Hb_006810_030 0.1328883482 - - Uncharacterized protein isoform 1 [Theobroma cacao]
5 Hb_012194_050 0.1344315878 - - Aspartyl aminopeptidase, putative [Ricinus communis]
6 Hb_001898_210 0.1356250059 - - PREDICTED: shaggy-related protein kinase kappa [Populus euphratica]
7 Hb_152202_010 0.1373726793 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
8 Hb_000056_130 0.1381456226 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
9 Hb_002400_330 0.1394657469 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
10 Hb_000010_140 0.1426164449 - - PREDICTED: rhodanese-like domain-containing protein 11, chloroplastic isoform X2 [Jatropha curcas]
11 Hb_000327_110 0.1450623313 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
12 Hb_001828_040 0.1452634687 - - PREDICTED: F-box protein SKIP14 [Jatropha curcas]
13 Hb_083641_010 0.1459096971 - - SECY isoform 1 [Theobroma cacao]
14 Hb_001491_030 0.1462478164 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
15 Hb_002200_040 0.1475737977 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
16 Hb_001726_090 0.1476743351 - - -
17 Hb_138781_010 0.1484807998 - - PREDICTED: pentatricopeptide repeat-containing protein At2g37230 [Jatropha curcas]
18 Hb_006274_040 0.1488901481 - - PREDICTED: DENN domain and WD repeat-containing protein SCD1-like [Fragaria vesca subsp. vesca]
19 Hb_000004_020 0.1506377357 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004117_160 0.1512880721 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_142328_010 Hb_142328_010 Hb_002079_050 Hb_002079_050 Hb_142328_010--Hb_002079_050 Hb_002079_030 Hb_002079_030 Hb_142328_010--Hb_002079_030 Hb_006810_030 Hb_006810_030 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010 Hb_002200_040 Hb_002200_040 Hb_002079_050--Hb_002200_040 Hb_002079_050--Hb_002079_030 Hb_150023_010 Hb_150023_010 Hb_002079_050--Hb_150023_010 Hb_002079_050--Hb_006810_030 Hb_026745_020 Hb_026745_020 Hb_002079_050--Hb_026745_020 Hb_001828_040 Hb_001828_040 Hb_002079_030--Hb_001828_040 Hb_069662_010 Hb_069662_010 Hb_002079_030--Hb_069662_010 Hb_011486_040 Hb_011486_040 Hb_002079_030--Hb_011486_040 Hb_000333_080 Hb_000333_080 Hb_002079_030--Hb_000333_080 Hb_004531_140 Hb_004531_140 Hb_002079_030--Hb_004531_140 Hb_000056_130 Hb_000056_130 Hb_006810_030--Hb_000056_130 Hb_001191_110 Hb_001191_110 Hb_006810_030--Hb_001191_110 Hb_001491_030 Hb_001491_030 Hb_006810_030--Hb_001491_030 Hb_000136_140 Hb_000136_140 Hb_006810_030--Hb_000136_140 Hb_000184_070 Hb_000184_070 Hb_006810_030--Hb_000184_070 Hb_000071_150 Hb_000071_150 Hb_006810_030--Hb_000071_150 Hb_012194_050--Hb_152202_010 Hb_001416_070 Hb_001416_070 Hb_012194_050--Hb_001416_070 Hb_005078_010 Hb_005078_010 Hb_012194_050--Hb_005078_010 Hb_003010_020 Hb_003010_020 Hb_012194_050--Hb_003010_020 Hb_000362_150 Hb_000362_150 Hb_012194_050--Hb_000362_150 Hb_032050_040 Hb_032050_040 Hb_012194_050--Hb_032050_040 Hb_172632_040 Hb_172632_040 Hb_001898_210--Hb_172632_040 Hb_009328_020 Hb_009328_020 Hb_001898_210--Hb_009328_020 Hb_001898_210--Hb_152202_010 Hb_000479_250 Hb_000479_250 Hb_001898_210--Hb_000479_250 Hb_001279_030 Hb_001279_030 Hb_001898_210--Hb_001279_030 Hb_000022_020 Hb_000022_020 Hb_001898_210--Hb_000022_020 Hb_007919_100 Hb_007919_100 Hb_152202_010--Hb_007919_100 Hb_152202_010--Hb_032050_040 Hb_152202_010--Hb_000362_150 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.8863 10.5008 17.8385 42.8579 17.9985 55.8152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9958 13.8493 14.8387 11.5231 48.4376

CAGE analysis