Hb_142392_010

Information

Type -
Description -
Location Contig142392: 1-6286
Sequence    

Annotation

kegg
ID rcu:RCOM_0519540
description hypothetical protein
nr
ID XP_012065610.1
description PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L567
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16859 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_142392_010 0.0 - - PREDICTED: uncharacterized protein LOC105628741 [Jatropha curcas]
2 Hb_010680_010 0.1848251848 - - -
3 Hb_116195_010 0.1918262992 - - -
4 Hb_001265_010 0.2389570499 transcription factor TF Family: NAC NAC transcription factor 057 [Jatropha curcas]
5 Hb_080083_010 0.252668295 - - -
6 Hb_145761_010 0.2570331206 - - -
7 Hb_000088_060 0.2697327373 - - -
8 Hb_008507_050 0.2855216359 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme-like [Jatropha curcas]
9 Hb_001195_590 0.2920503076 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
10 Hb_008078_030 0.2935828795 - - -
11 Hb_000275_040 0.2967187486 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_001811_040 0.2985338882 - - -
13 Hb_004324_020 0.2986923001 - - -
14 Hb_030619_010 0.300088892 - - -
15 Hb_001158_030 0.3083488736 - - -
16 Hb_000221_100 0.3100502457 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
17 Hb_017417_010 0.3108899333 - - -
18 Hb_002742_010 0.3182327308 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
19 Hb_015456_020 0.3187770275 - - -
20 Hb_004374_060 0.324911986 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]

Gene co-expression network

sample Hb_142392_010 Hb_142392_010 Hb_010680_010 Hb_010680_010 Hb_142392_010--Hb_010680_010 Hb_116195_010 Hb_116195_010 Hb_142392_010--Hb_116195_010 Hb_001265_010 Hb_001265_010 Hb_142392_010--Hb_001265_010 Hb_080083_010 Hb_080083_010 Hb_142392_010--Hb_080083_010 Hb_145761_010 Hb_145761_010 Hb_142392_010--Hb_145761_010 Hb_000088_060 Hb_000088_060 Hb_142392_010--Hb_000088_060 Hb_001158_030 Hb_001158_030 Hb_010680_010--Hb_001158_030 Hb_015456_020 Hb_015456_020 Hb_010680_010--Hb_015456_020 Hb_004374_060 Hb_004374_060 Hb_010680_010--Hb_004374_060 Hb_010680_010--Hb_145761_010 Hb_005214_110 Hb_005214_110 Hb_010680_010--Hb_005214_110 Hb_008507_050 Hb_008507_050 Hb_116195_010--Hb_008507_050 Hb_116195_010--Hb_010680_010 Hb_004324_020 Hb_004324_020 Hb_116195_010--Hb_004324_020 Hb_008078_030 Hb_008078_030 Hb_116195_010--Hb_008078_030 Hb_020730_010 Hb_020730_010 Hb_116195_010--Hb_020730_010 Hb_001495_060 Hb_001495_060 Hb_001265_010--Hb_001495_060 Hb_001265_010--Hb_010680_010 Hb_000538_150 Hb_000538_150 Hb_001265_010--Hb_000538_150 Hb_002685_180 Hb_002685_180 Hb_001265_010--Hb_002685_180 Hb_032202_030 Hb_032202_030 Hb_001265_010--Hb_032202_030 Hb_005057_010 Hb_005057_010 Hb_080083_010--Hb_005057_010 Hb_000140_150 Hb_000140_150 Hb_080083_010--Hb_000140_150 Hb_000525_040 Hb_000525_040 Hb_080083_010--Hb_000525_040 Hb_027556_010 Hb_027556_010 Hb_080083_010--Hb_027556_010 Hb_080083_010--Hb_000088_060 Hb_017417_010 Hb_017417_010 Hb_080083_010--Hb_017417_010 Hb_000221_100 Hb_000221_100 Hb_145761_010--Hb_000221_100 Hb_000680_150 Hb_000680_150 Hb_145761_010--Hb_000680_150 Hb_003777_070 Hb_003777_070 Hb_145761_010--Hb_003777_070 Hb_002918_280 Hb_002918_280 Hb_145761_010--Hb_002918_280 Hb_000977_140 Hb_000977_140 Hb_145761_010--Hb_000977_140 Hb_000183_070 Hb_000183_070 Hb_145761_010--Hb_000183_070 Hb_006557_010 Hb_006557_010 Hb_000088_060--Hb_006557_010 Hb_001195_590 Hb_001195_590 Hb_000088_060--Hb_001195_590 Hb_006735_040 Hb_006735_040 Hb_000088_060--Hb_006735_040 Hb_004092_010 Hb_004092_010 Hb_000088_060--Hb_004092_010 Hb_000088_060--Hb_005057_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.70118 0.63289 0 0 2.89337 0.0982859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.60824 1.88799 0 0 0

CAGE analysis